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Job DescriptionP04846
Confidence98.78%DateThu Jan 5 10:58:24 GMT 2012
Rank66Aligned Residues236
% Identity13%Templated1a99a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution2.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60.........70.........80. ........90.........100
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Query Sequence  AKHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGE. . LDANVFQHRPFLEQDNQAH. . . . . . . .
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Template Sequence  QKTLHIYNWSDYIA. . . PDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSK
Template Known Secondary structure 

TT
S
...TT

S





S

BTT
B



GGG
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   2930.........40.. .......50.........60.........70.........80.........90.........100.....
 
   101........110.........120.........130 .........140....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GYKLVAVGNTFVFPMAGYSKKIKTVAQIKE. . . . . . GATVAIPNDPTNLG
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Template Sequence  LPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEE
Template Known Secondary structure 
GGGGGB
TTSGGG
S
TT

TTSTSGGG

S
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   106...110.........120.........130.........140.........150.........160.........170.........180.....
 
   145....150.........160.........170.........180.........190.........200.........210. ......
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Query Sequence  RALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTG. . . . . . . LSPVHD
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Template Conservation           
                  
                  
  
  
                          
Template Sequence  VFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVS
Template Known Secondary structure  TTS
TT


TGGG


SSTTTS
ST
S

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   186...190.........200.........210.........220.........230.........240.........250.........260.....
 
   218.220.........230.........240.........250.........260.........270.
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Query Sequence  SVFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETIFNGGAVPG
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Template Sequence  FSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVF. . YANA
Template Known Secondary structure 

TT

BTT
S
S
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S
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   266...270.........280.........290.........300.........310... ....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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