Job Description P04846 Confidence 99.75% Date Thu Jan 5 10:58:24 GMT 2012 Rank 20 Aligned Residues 219 % Identity 18% Template c3tmgA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi Resolution 1.90 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		K	H	I	K	V	G	V	I	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	.	N	Q	A	H	G	Y	K	L	V	A	V	G	N	T
Query Conservation																																																																			.
Alig confidence																																						.																													.
Template Conservation																																						.
Template Sequence		K	S	V	K	I	G	Y	V	N	W	G	G	E	T	A	A	T	N	V	L	K	V	V	F	E	K	M	G	Y	N	A	E	I	F	S	V	.	T	T	S	I	M	Y	Q	Y	L	A	S	G	K	I	D	G	T	V	S	S	W	V	P	T	A	D	K	F	Y	Y	E	K	L	K	T	K	F	V	D	L	G	A	N
Template Known Secondary structure																												T	T									.											T	T	S	S	S								T	T	T	T								G	G	G
Template Predicted Secondary structure																																						.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		111	.	.					.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.																.	.	.	.	.	.	.
Query SS confidence					.	.	.	.																.	.	.	.	.	.	.
Query Sequence		F	V	F	.	.	.	.	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	.	.	.	.	.	.	.	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q
Query Conservation					.	.	.	.																.	.	.	.	.	.	.
Alig confidence					.	.	.	.																.	.	.	.	.	.	.		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	E	G	T	I	Q	G	F	V	V	P	S	Y	V	P	I	S	S	I	S	E	L	K	G	K	G	D	K	F	K	.	N	K	M	I	G	I	D	A	G	A	G	T	Q	I	V	T	E	Q	A	L	N	Y	Y	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	E	Y	E	L
Template Known Secondary structure													T	T	S				B	G	G	G	G	T	T		G	G	G	G	T	.	T						S	T	T														T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S
Template Predicted Secondary structure																																.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.																			160	.	.	.	.	.
		180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure								.	.	.																																																					.	.																	.
Query SS confidence								.	.	.																																																					.	.																	.
Query Sequence		I	M	E	L	E	G	.	.	.	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	.	.	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	Q	S	.
Query Conservation								.	.	.																																																					.	.																	.
Alig confidence								.	.	.																																																					.	.																	.
Template Conservation
Template Sequence		V	P	S	S	E	S	V	M	L	A	S	L	D	S	S	I	K	R	N	E	W	I	L	V	P	L	W	K	P	H	W	A	F	S	R	Y	D	I	K	F	L	D	D	P	D	L	I	M	G	G	I	E	S	V	H	T	L	V	R	L	G	L	E	N	D	D	F	D	A	Y	Y	V	F	D	H	F	Y	W	S	D
Template Known Secondary structure																			T	T										S		T					S						B		T	T		T	T		S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
																				254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	V	A	K	A	A	E	T	I	F	N	G	G	A	V	P	G	W
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																														.	.
Template Sequence		D	L	I	L	P	L	M	D	K	N	D	K	E	P	G	K	E	Y	R	N	A	V	E	F	V	E	K	N	.	.	K	E	I	V	K	T	W
Template Known Secondary structure														S	T	T													T	.	.						T	T
Template Predicted Secondary structure																														.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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