Job Description P04846 Confidence 99.05% Date Thu Jan 5 10:58:24 GMT 2012 Rank 52 Aligned Residues 210 % Identity 14% Template c3r6uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis Resolution 1.61 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																											.											.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.											.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	H	I	K	V	G	V	I	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	.	K	Y	G	L	D	V	E	L	V	G	.	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.											.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.											.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	T	I	K	I	G	A	Q	S	M	S	E	S	E	I	I	A	S	M	L	G	Q	L	I	E	H	H	T	D	L	K	T	T	T	I	K	N	L	G	S	N	A	V	Q	Q	Q	A	L	M	N	G	E	I	D	I	A	A	T	R	Y	T	G	D	A	L	T	G	T	L	R	M	E	P	E	K	D	P	D	K	A
Template Known Secondary structure										S	S																		S	S											S										T	T	S		S														T	T							S
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
							94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																												.	.	.	.	.	.											.	.	.																.	.
Query SS confidence		.	.	.	.	.																												.	.	.	.	.	.											.	.	.																.	.
Query Sequence		.	.	.	.	.	E	Q	D	N	Q	A	H	G	Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K	.	.	.	.	.	.	K	I	K	T	V	A	Q	I	K	E	.	.	.	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	.	.	A	L	L	L	L	Q	K	E	K	L	I	T
Query Conservation		.	.	.	.	.																												.	.	.	.	.	.											.	.	.																.	.
Alig confidence		.	.	.	.	.																												.	.	.	.	.	.											.	.	.																.	.											.	.
Template Conservation																																																																																.	.
Template Sequence		L	A	L	T	Q	R	E	F	K	K	R	Y	D	L	K	W	Y	D	S	Y	G	F	D	N	T	Y	A	F	T	V	S	K	E	L	A	D	Q	Y	H	L	E	T	V	S	D	V	K	K	W	A	P	Q	L	K	L	G	V	D	N	Y	W	M	K	L	K	G	N	G	Y	Q	D	F	T	K	T	Y	G	M	.	.
Template Known Secondary structure																						S		B																T			B	S	G	G	G	G	G	G	G	G	G							T	T	G	G	G		S	S	S	S											.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	G	G	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	S	G	K	M	D	I	V	L	A	Y	S	T	D	G	R	I	K	S	Y	G	.	L	K	M	L	K	D	D	K	Q	F	F	P	P	Y	D	C	S	P	V	V	P	E	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S							G	G	G								T	S		S						T	T							T	T	.					B		T	T			S				B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template SS confidence
																				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
				238	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure		.	.														.	.	.
Query SS confidence		.	.														.	.	.
Query Sequence		.	.	N	K	N	A	E	N	V	K	E	F	L	Q	S	.	.	.	Y	Q	S	P	E	V	A	K	A	A	E	T
Query Conservation		.	.														.	.	.
Alig confidence		.	.														.	.	.
Template Conservation
Template Sequence		V	L	K	E	H	P	E	L	E	G	I	I	K	K	M	L	G	K	I	D	T	A	T	M	Q	E	L	N	Y	E
Template Known Secondary structure						S	T	T							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions