Job Description P04846 Confidence 99.87% Date Thu Jan 5 10:58:24 GMT 2012 Rank 14 Aligned Residues 212 % Identity 17% Template c3qslA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of cae31940 from bordetella bronchiseptica rb50 Resolution 2.00 Å

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		33	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		H	I	K	V	G	V	I	N	G	A	.	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	G	Y	K	L	V	A	V	G	N	T	F
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		Q	I	A	V	G	G	K	P	L	I	Y	Y	L	P	L	T	I	A	E	V	K	G	F	F	K	D	E	G	L	D	V	S	I	A	D	F	A	G	G	S	K	A	L	Q	A	V	V	G	G	S	A	D	V	V	S	G	A	F	E	H	T	L	S	L	Q	A	K	G	Q	F	Y	R	A	F	A	L	Q	G	R	A
Template Known Secondary structure						S		T	T	S	G	G	G									T	T					T	T									S	S										T	T	S		S						T									T	T									S	B	S	S
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		112	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		V	F	P	M	A	G	Y	.	.	.	.	S	K	K	I	K	T	V	A	Q	I	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A	Q
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	X	I	G	V	G	V	S	K	K	N	L	P	G	Y	K	G	P	A	D	L	K	G	R	K	I	G	V	T	A	P	G	S	S	T	N	X	V	V	N	F	F	L	A	K	H	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	S	D	V	S	F	I	G	V	G	A	G	A	G
Template Known Secondary structure										T	T	T		T	T			S	G	G	G	G	T	T						S	S	T	T	S													T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	S							S	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.																		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.										.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.													.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.													.	.
Query Sequence		L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	.	.	.	.	.	.	.	.	.	S	P	Y	V	N	I	L	V	A	R	E	D	.	.	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	Q	S	P	E	V
Query Conservation																																								.	.	.	.	.	.	.	.	.													.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.													.	.																.	.
Template Conservation																																																																														.	.
Template Sequence		A	V	T	A	L	R	S	G	Q	I	D	A	I	S	N	T	D	P	V	V	S	X	L	E	T	S	G	D	I	Q	I	I	V	D	T	R	T	L	K	D	T	K	E	I	F	G	G	N	X	P	A	G	C	L	Y	A	P	Q	A	F	V	D	A	N	P	N	T	A	Q	A	L	T	N	A	I	V	.	.	R	A
Template Known Secondary structure									T	S		S						T	T								T	T									S	S									S	S																														.	.
Template Predicted Secondary structure																																																																														.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.
		257	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	A	E	T	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	W	I	Q	K	A
Template Known Secondary structure								S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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