Job Description P04846 Confidence 97.47% Date Thu Jan 5 10:58:24 GMT 2012 Rank 152 Aligned Residues 240 % Identity 13% Template c3oo6A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:abc transporter binding protein acbh; PDBTitle: crystal structures and biochemical characterization of the bacterial2 solute receptor acbh reveal an unprecedented exclusive substrate3 preference for b-d-galactopyranose Resolution 2.15 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																	.	.																										.	.	.																																.	.	.	.
Query SS confidence																	.	.																										.	.	.																																.	.	.	.
Query Sequence		D	A	K	H	I	K	V	G	V	I	N	G	A	E	Q	.	.	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	G	.	.	.	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	.	.	.	.
Query Conservation																	.	.																										.	.	.																																.	.	.	.
Alig confidence																	.	.																										.	.	.																																.	.	.	.
Template Conservation
Template Sequence		G	N	G	P	I	T	F	G	S	N	Y	S	D	E	A	P	K	A	A	F	A	S	L	M	Q	Q	A	T	T	S	T	T	V	P	V	T	V	N	T	T	D	H	N	T	F	Q	N	N	I	S	N	Y	L	Q	G	T	P	D	S	L	A	T	W	F	A	G	Y	R	L	Q	F	F	A	A	Q	G	L	L	T	P
Template Known Secondary structure				S										S																																			T							S				S							T								T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
																									101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.										120	.	.	.	.	.	.	.	.										.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	.	.	.	.	.	.	.	.	.	K	K	I	K	T	V	A	Q	I	.	.	.	.	.	.	.	.	.	K	E	G	A	T	V	A	I	P	N	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	D	V	W	D	K	I	G	G	T	F	N	D	A	A	K	S	L	S	K	G	L	D	G	H	Y	Y	L	V	P	L	Y	N	Y	P	W	V	V	F	Y	N	K	S	V	F	Q	S	K	G	Y	E	V	P	A	S	W	E	A	F	I	A	L	A	R	K	M	Q	S	D	G	L	V	P	L	A	F	A	D	K
Template Known Secondary structure										G	G	G	S							T	T	B		T	T	S		B																							T						B														T	T	S								T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		140	.	.	.															.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	T	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	W	P	A	L	G	T	F	D	I	L	N	L	R	I	N	G	Y	D	Y	H	I	K	L	M	K	H	E	V	P	W	T	D	P	G	V	T	K	V	F	D	Q	W	R	E	L	A	A	Y	Q	Q	K	G	A	N	G	R	T	W	Q	D	A	A	K	A	L	E	N	K	Q	A	G	M	M	F	Q	G	S	N
Template Known Secondary structure		T	S	S	T	T												T										T	T	S	S		T	T	S															T	T	B		S	S	G	G	G												T	T	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.												.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	Y	.	.	.	.	.	.	.	.	.	.	.	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	Q	S	P	E	V	A	K	A	A	E	T	I	F	N	G	G	A	V	P	G
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation																																																																							.	.
Template Sequence		Q	V	A	A	N	Y	S	A	K	N	L	P	D	L	D	F	F	V	F	P	A	I	N	P	Q	Y	G	T	D	Y	M	D	A	P	T	D	G	F	I	L	P	K	K	G	K	N	A	A	A	A	K	K	V	L	Q	Y	I	G	T	A	E	A	E	A	A	F	L	K	T	.	.	D	H	W	D	V	G
Template Known Secondary structure							S		T	T	T	G	G	G								B			T	T	T	T	T													B	T	T		S													T	S									T	T	.	.			S	S
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions