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Job DescriptionP04846
Confidence98.67%DateThu Jan 5 10:58:24 GMT 2012
Rank77Aligned Residues242
% Identity12%Templatec3oaiB_
PDB info PDB header:membrane protein, cell adhesionChain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0; PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60......... 70.........80.. .......90.........100
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Query Sequence  SSDAKHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSG. SLLPNDATNHGEL. DANVFQHRPFLEQDNQAH. . . . .
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Template Sequence  KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT
Template Known Secondary structure 


SSS

TTS
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TTTTT
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SGGGTT
B



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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   101........110.........120........ .130.........140........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . GYKLVAVGNTFVFPMAGYSKKIKTVAQI. . . . . . . . KEGATVAIPNDPTNLGRALL
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Template Sequence  PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   149150.........160.........170..... ....180.........190.........200.........210.....
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Query Sequence  LLQKEKLITLKEGKGLLPTALDITDNP. . . . . . . . . . . . . RHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPV
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Template Sequence  IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   216...220... ......230. ........240......... 250.........260.........270.
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Query Sequence  HDSVFIED. . . . . KNSPYVNI. . LVAREDNKNAENVKEFLQ. SYQSPEVAKAAETIFNGGAVPG
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Template Sequence  NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKD. . KPLGAV
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   241........250.........260.........270.........280.........290...... ...300..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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