Job Description P04846 Confidence 98.70% Date Thu Jan 5 10:58:24 GMT 2012 Rank 74 Aligned Residues 205 % Identity 13% Template c3mplA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:virulence sensor protein bvgs; PDBTitle: crystal structure of bordetella pertussis bvgs vft2 domain (double2 mutant f375e/q461e) Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		30	.	.	.	.	.	.	.	.	.	40										.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure													.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.
Query Sequence		D	A	K	H	I	K	V	G	V	I	N	.	.	.	.	.	.	.	.	.	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H
Query Conservation													.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.																																																	.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		D	H	P	V	V	K	V	A	V	L	N	L	F	A	P	F	T	L	F	R	E	Q	F	G	G	I	S	A	A	V	L	Q	L	L	Q	L	R	T	G	L	D	F	E	I	I	G	V	D	T	V	E	E	L	I	A	K	L	R	S	G	E	A	D	M	A	G	A	L	.	.	.	E	V	N	S	A	R	E	S	F
Template Known Secondary structure				S								T			T	T	T									S																							S												T	S	S	S						.	.	.				G	G	G	T	T	T
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.				.	.	.	.	.	.	.	380	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I
Query Conservation
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	F	S	R	P	Y	V	R	N	G	M	V	I	V	T	R	Q	D	P	D	A	P	V	D	A	D	H	L	D	G	R	T	V	A	L	V	R	N	S	A	A	I	P	L	L	Q	R	R	Y	P	Q	A	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V
Template Known Secondary structure																					S	S			T	T	T	T			T	T	S						T	T		T								S	S	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.																									.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.				.	.	.	.
Predicted Secondary structure																																		.	.																																								.	.	.
Query SS confidence																																		.	.																																								.	.	.
Query Sequence		M	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	.	.	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	.	.	.	Q	S	P	E
Query Conservation																																		.	.																																								.	.	.
Alig confidence																																		.	.																										.	.													.	.	.
Template Conservation																																																													.	.
Template Sequence		T	A	D	N	P	S	E	A	M	L	M	V	A	N	G	Q	A	D	A	V	V	E	T	Q	I	S	A	S	Y	Y	V	N	R	Y	F	A	G	K	L	R	I	A	S	A	L	D	L	P	P	A	E	I	A	L	A	T	T	R	G	.	.	Q	T	E	L	M	S	I	L	N	K	A	L	Y	S	I	S	N	D	E
Template Known Secondary structure				S	S											T	S		S																		T	T	T									S											T	T	.	.														T	S
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	K	A	A	E	T	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	S	I	I	S	R	W
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		518	.	520	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions