Job Description P04846 Confidence 98.93% Date Thu Jan 5 10:58:24 GMT 2012 Rank 56 Aligned Residues 239 % Identity 15% Template c3k6wA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:solute-binding protein ma_0280; PDBTitle: apo and ligand bound structures of moda from the archaeon2 methanosarcina acetivorans Resolution 2.45 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																													.																								.																							.	.	.	.	.	.
Query SS confidence																													.																								.																							.	.	.	.	.	.
Query Sequence		K	H	I	K	V	G	V	I	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	.	G	L	D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	.	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	G	Y	K	.	.	.	.	.	.
Query Conservation																													.																								.																							.	.	.	.	.	.
Alig confidence							.																						.																								.																							.	.	.	.	.	.
Template Conservation							.
Template Sequence		E	V	L	T	V	.	F	H	A	G	S	L	S	V	P	F	E	E	L	E	A	E	F	E	A	Q	H	P	G	V	D	V	Q	R	E	A	A	G	S	A	Q	S	V	R	K	I	T	E	L	G	K	K	A	D	V	L	A	S	A	D	Y	A	L	I	P	S	L	M	V	P	E	Y	A	D	W	Y	A	A	F	A
Template Known Secondary structure							.				G	G	G																T	T																			T	S					S					S	S	T	T						T	T	T	T	T		S
Template Predicted Secondary structure							.
Template SS confidence
		41	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
						104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	N	Q	M	I	L	A	Y	T	N	E	S	K	Y	G	D	E	I	N	T	D	N	W	Y	E	I	L	R	R	P	D	V	R	Y	G	F	S	N	P	N	D	D	P	A	G	Y	R	S	Q	M	V	T	Q	L	A	E	S	Y	Y	N	D	D	M	I	Y	D	D	L	M	L	A	N	T	G	M	T	L	T	T	E
Template Known Secondary structure											T	T	S	T	T	T	T	S			T	T	T							S	T	T								T	T	T																		T	T		T	T						T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
									165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.																							.
Predicted Secondary structure		.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V
Query Conservation		.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	G	T	A	L	I	H	V	P	A	S	E	E	I	S	P	N	T	S	K	I	M	L	R	S	M	E	V	E	L	S	S	A	L	E	T	G	E	I	D	Y	L	Y	I	Y	R	S	V	A	E	Q	H	G	F	E	Y	V	A	L	P	P	A	I	D	L	S	S	L	E	Y	A	D	N	Y	S	K	V	Q	V
Template Known Secondary structure		T	T	S									G	G	G	S				T	T	T					S	S	G	G	G	S						T	T	S		S													T								T	T	T	S	S			G	G	G					T	T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	Q	S	P	E	V	A	K	A	A	E	T	I	F	N	G	G	A	V	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	M	V	N	G	E	V	V	T	G	S	P	I	V	Y	G	V	T	I	P	N	N	A	E	N	S	E	L	A	T	E	F	V	A	L	L	L	G	E	T	G	Q	Q	I	F	I	E	N	G	Q	P	P	I	V	P	A
Template Known Secondary structure				T	T	S																T	T		S	S													S										T	T
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions