Job Description P04846 Confidence 98.72% Date Thu Jan 5 10:58:24 GMT 2012 Rank 72 Aligned Residues 209 % Identity 10% Template c3k4uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine Resolution 2.62 Å

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		33	.	.	.	.	.	.	40	.	.	.	.												.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	I	K	V	G	V	I	N	G	A	E	Q	.	.	.	.	.	.	.	.	.	.	.	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	G
Query Conservation														.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																																																.
Template Sequence		E	L	R	V	G	L	E	P	G	Y	L	P	F	E	X	K	D	K	K	G	N	V	I	G	F	D	V	D	L	A	R	E	X	A	K	A	X	G	V	K	L	K	L	V	P	T	.	S	W	D	G	L	I	P	G	L	V	T	E	K	F	D	I	I	I	S	G	X	T	I	S	Q	E	R	N	L	R	V	N	F
Template Known Secondary structure									T	T	S	T	T	T					T	T	T				S														T									.		G	G	G							T	T	S		S				S	S		B							T	T	S
Template Predicted Secondary structure																																																.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	P	Y	I	V	V	G	Q	S	L	L	V	K	K	G	L	E	K	G	V	K	S	Y	K	D	L	D	K	P	E	L	T	L	V	T	K	F	G	V	S	A	E	Y	A	A	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	K	N	A	K	L	K	T
Template Known Secondary structure			S		S											T	T	T	T	T	T			S	G	G	G	G			S	S							T	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130																								.	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.
Predicted Secondary structure																													.																																												.	.	.	.
Query SS confidence																													.																																												.	.	.	.
Query Sequence		E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	.	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	.	.	.	.	Q	S	P	E	V
Query Conservation																													.																																												.	.	.	.
Alig confidence																													.																														.	.													.	.	.	.
Template Conservation																																																											.	.
Template Sequence		Y	D	T	E	A	E	A	V	Q	E	V	L	N	G	K	A	D	X	F	I	F	D	L	P	F	N	V	A	F	X	A	Q	K	G	Q	G	Y	L	V	H	L	D	T	S	L	T	Y	E	P	L	G	W	A	I	K	K	G	.	.	D	P	D	F	L	N	W	L	N	H	F	L	A	Q	I	K	H	D	G	S	Y
Template Known Secondary structure			S	S										S	S	S	S																	T	T	T	T	T									S										T	T	.	.																			S
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	A	E	T	I	F	N	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	L	Y	E	R	W	F	V	D	T
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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