Return to main results Retrieve Phyre Job Id

Job DescriptionP04846
Confidence99.85%DateThu Jan 5 10:58:24 GMT 2012
Rank17Aligned Residues224
% Identity16%Templatec3ix1B_
PDB info PDB header:biosynthetic proteinChain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.. .......50.........60.........70.........80.........90.........100......
Predicted Secondary structure 







.



















Query SS confidence 














.































































Query Sequence  SSDAKHIKVGVINGA. EQDVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGYKLVA
Query Conservation        
 

     .             
  
  
              
  
  
                       
Alig confidence 














.































































Template Conservation 

  
 
 
   
     
  

   
 
   




            

  
  
               
     
 
Template Sequence  ALETVEVMLDWYPNAVHTFLYVAIENGYFAEEGLDVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVA
Template Known Secondary structure 


SSSS
GGGTTTT

SSTTTTS
S
TT

Template Predicted Secondary structure 






















Template SS confidence 















































































   2930.........40.........50.........60.........70.........80.........90.........100........
 
   107. .110.........120.........130.........140.........150.........160.........170.........180....
Predicted Secondary structure  ..





































Query SS confidence 

. .











































































Query Sequence  VG. . NTFVFPMAGYSKKIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELE
Query Conservation    ..                  

  

                 
   
                              
Alig confidence 

..




















.
























..................










Template Conservation           
     
 
 
  


.

 
     
         
   

..................    
  
   
Template Sequence  SVVRSPLNHVMFLAEQDFDSPADLV. GLTVGYPGIPVNEPILKTMVEAAGG. . . . . . . . . . . . . . . . . . DYEQVHLMDVG
Template Known Secondary structure 
S

B
TTT

SSGGGGT.TS
S
TTTT
..................
GGG

T
Template Predicted Secondary structure 












.







..................



Template SS confidence 















































































   109110.........120.........130... ......140.........150........ .160.........
 
   185....190.........200...... ...210.........220... ......230....... ..240.........250.
Predicted Secondary structure 



..







...





..



......
Query SS confidence 





















. .
















. . .













. .













. . . . . .
Query Sequence  GAQLPRVLDDPKVDVAIISTTY. . IQQTGLSPVHDSVFIED. . . KNSPYVNILVARED. . NKNAENVKEFLQSY. . . . . .
Query Conservation         
  
 

        ..                 ...              ..       
 

  
......
Alig confidence  .




















..
















...













..













......
Template Conservation  .     

  
 


                                       
        

 
     
   
   
Template Sequence  . FELGASIVSGRADAVVGTYINHEYPVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYVEESGEVLAAFWRAALKGYEW
Template Known Secondary structure  .T
TTS
S
S
BTTTTT


GGGTT




S
Template Predicted Secondary structure  .
























Template SS confidence 















































































   170.........180.........190.........200.........210.........220.........230.........240........
 
   252.......260.........270.
Predicted Secondary structure  ...









Query SS confidence  . . .



















Query Sequence  . . . QSPEVAKAAETIFNGGAVPG
Query Conservation  ... 
 
    
     
  

 
Alig confidence  ...



















Template Conservation      
  
               
Template Sequence  MVENPDEALNVLLTNQDEANFPL
Template Known Secondary structure  STS
TTTS

Template Predicted Secondary structure 




Template SS confidence 






















   249250.........260.........270.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions