Job Description P04846 Confidence 98.01% Date Thu Jan 5 10:58:24 GMT 2012 Rank 133 Aligned Residues 202 % Identity 13% Template c3i6vA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic his/glu/gln/arg/opine family-binding protein; PDBTitle: crystal structure of a periplasmic his/glu/gln/arg/opine family-2 binding protein from silicibacter pomeroyi in complex with lysine Resolution 2.00 Å

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		33	.	.	.	.	.	.												40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	I	K	V	G	V	I	.	.	.	.	.	.	.	.	.	.	.	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	G
Query Conservation									.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.																													.																															.	.	.
Template Conservation																																																.																															.	.	.
Template Sequence		T	V	R	M	G	T	E	G	A	Y	P	P	Y	N	F	I	N	D	A	G	E	V	D	G	F	E	R	E	L	G	D	E	L	C	K	R	A	G	L	T	C	E	W	V	K	N	.	D	W	D	S	I	I	P	N	L	V	S	G	N	Y	D	T	I	I	A	G	M	S	I	T	D	E	R	D	E	V	.	.	.
Template Known Secondary structure									S			T	T	T					T	T	S				S														T									.		G	G	G							T	T	S		S				S	S		B							T	T	.	.	.
Template Predicted Secondary structure																																																.																															.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M
Query Conservation
Alig confidence																										.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	F	T	Q	N	Y	I	P	P	T	A	S	S	Y	V	A	T	S	D	G	A	D	L	.	.	.	.	.	S	G	I	V	A	A	Q	T	A	T	I	Q	A	G	Y	I	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	A	T	L	V	E
Template Known Secondary structure		S																	S	S	T	T			T	.	.	.	.	.	T	S						T	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																										.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																											170	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.
Predicted Secondary structure																													.																																												.	.	.	.
Query SS confidence																													.																																												.	.	.	.
Query Sequence		E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	.	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	.	.	.	.	Q	S	P	E	V
Query Conservation																													.																																												.	.	.	.
Alig confidence																													.																														.	.													.	.	.	.
Template Conservation																																																											.	.
Template Sequence		F	A	T	P	E	E	T	I	A	A	V	R	N	G	E	A	D	A	V	F	A	D	R	D	Y	L	V	P	I	V	A	E	S	G	G	E	L	M	F	V	G	D	D	V	P	L	G	G	G	V	G	M	G	L	R	E	S	.	.	D	G	E	L	R	G	K	F	D	A	A	I	T	S	M	K	E	D	G	T	L
Template Known Secondary structure			S	S										T	T	S	S	S																T	T	T	S	S										S	S								T	T	.	.																		T	S
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	A	E	T	I	F	N	G	G	A	V	P	G	W
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		N	T	M	I	K	K	W	F	.	G	E	D	A	A	V	Y
Template Known Secondary structure										.		T	T	S
Template Predicted Secondary structure										.
Template SS confidence
		255	.	.	.	.	260	.	.		.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions