Job Description P04846 Confidence 92.96% Date Thu Jan 5 10:58:24 GMT 2012 Rank 192 Aligned Residues 237 % Identity 12% Template c3i3vC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:probable secreted solute-binding lipoprotein; PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor Resolution 2.30 Å

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		29	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure													.	.	.																			.													.	.														.																			.
Query SS confidence													.	.	.																			.													.	.														.																			.
Query Sequence		S	D	A	K	H	I	K	V	G	V	I	.	.	.	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	.	Y	G	L	D	V	E	L	V	G	F	S	G	.	.	S	L	L	P	N	D	A	T	N	H	G	E	L	.	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	.
Query Conservation													.	.	.																			.													.	.														.																			.
Alig confidence													.	.	.																			.													.	.														.																			.
Template Conservation
Template Sequence		S	D	P	D	T	L	V	V	H	T	Q	L	G	T	T	A	P	G	S	P	T	Y	L	A	A	V	D	R	F	R	E	E	N	P	G	V	K	I	K	N	L	V	N	G	D	D	L	A	Q	V	Y	E	T	S	R	L	A	R	K	E	A	D	V	V	X	V	N	L	Y	D	K	T	L	A	W	T	D	V	G	A
Template Known Secondary structure			S	T	T							S		S	S	S	S	T	T																T	T									S	T	T											T	T				S							S	T	T	G	G	G					T	S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
																																					101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.										.	130	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.												.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.												.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	.	.	.	Y	S	K	K	I	K	T	V	A	Q	I	.	.	.	.	.	.	.	.	.	K	E	G	A	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.												.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	D	V	K	P	Y	L	D	D	W	G	L	R	G	R	V	L	P	A	A	L	A	D	W	T	D	D	E	G	R	V	R	A	F	P	Y	F	A	T	N	W	P	V	A	Y	N	R	A	L	L	D	R	A	G	V	D	A	I	P	T	T	G	D	Q	L	I	A	A	A	R	K	L	R	A	K	G	I	A	P
Template Known Secondary structure		S									G	G	G		T	T	S	B								T	B		T	T	S		B		S	B																				T			S				B														T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150															.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	T	V	G	G	N	D	W	T	G	Q	K	L	L	A	Q	I	I	Q	T	F	L	S	Q	D	E	A	R	H	V	Y	S	T	G	D	F	G	V	R	G	A	R	L	G	I	E	Y	F	A	H	L	R	D	A	G	V	F	A	D	K	A	Q	G	L	T	S	D	S	X	T	T	Q	F	N	T	E	E	A	A	V
Template Known Secondary structure						T	T	S												G	G	G													T		T	T	S																T	T		B		T	T	G	G	G												T	T	S
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.															.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	Q	S	P	E	V	A	K	A	A	E	T	I	F	N
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	S	A	X	S	S	A	L	A	K	V	P	E	K	V	A	G	H	T	E	V	G	G	W	P	L	A	D	G	A	A	H	D	G	P	T	V	I	R	A	Y	T	L	I	G	F	W	I	S	P	N	G	V	R	K	I	E	Q	V	E	K	F	L	R	F	X	Y	R	P	D	V	V	A	R	F	V	T	E	S	G
Template Known Secondary structure										T	T	S							T						B		B		T	T		S	S	S	S									S	S											T												T	S
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions