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Job DescriptionP04846
Confidence98.69%DateThu Jan 5 10:58:24 GMT 2012
Rank76Aligned Residues240
% Identity13%Templatec3h4zC_
PDB info PDB header:allergenChain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  DAKHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSG. SLLPNDATNHGEL. DANVFQHRPFLEQDNQAH. . . . . . .
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Template Sequence  EEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPA
Template Known Secondary structure 
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TTS
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SSTTTT
S
SGGGTT
B





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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   101........110.........120........ .130.........140.........150.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . GYKLVAVGNTFVFPMAGYSKKIKTVAQI. . . . . . . KEGATVAIPNDPTNLGRALLLLQ
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Template Sequence  AAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIA
Template Known Secondary structure  B
TBSSSSB
S


TTTSSS

SBSTTTTT




SSG
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   152.......160..... ....170.........180. ........190.........200.........210.......
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Query Sequence  KEKLITLKEGKGLL. . . . . . . . . . . . . PTALDITDNPRHLQIM. ELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHD
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Template Sequence  ADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNY
Template Known Secondary structure  GGT

SSSSSSTTSS
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TT

GGGTTT


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   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   218.220... ......230 .........240......... 250.........260.........270.
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Query Sequence  SVFIED. . . . . KNSPYVN. . ILVAREDNKNAENVKEFLQ. SYQSPEVAKAAETIFNGGAVPG
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Template Sequence  GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKD. . KPLGAV
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   243......250.........260.........270.........280.........290...... ...300..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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