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Job DescriptionP04846
Confidence98.33%DateThu Jan 5 10:58:24 GMT 2012
Rank110Aligned Residues241
% Identity14%Templatec2zykA_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.... .....50.........60......... 70.........80. ........90.........100
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Query Sequence  DAKHIKVGVINGAEQ. . DVAEVAKKVAKEKYGLDVELVGFSG. . . SLLPNDATNHGE. LDANVFQHRPFLEQDNQAH. . .
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Template Sequence  KPDKLVVWENADDGVQLNNTKKWAGEFTKKTGIQVEVVPVALLKQQEKLTLDGPAGKGADLVTWPHDRLGEAVTKGLLQP
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SS



TTTGGGT
S
SGGGTTTT

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   17..20.........30.........40.........50.........60.........70.........80.........90......
 
   101........110.........120........ .130.........140.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . GYKLVAVGNTFVFPMAGYSKKIKTVAQI. . . . . . . . . KEGATVAIPNDPTNLGR
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Template Sequence  IQVDNSVKNQFDDVAMKALTYGGKLYGLPKAIESVALIYNKKLMGQVPATYDELFQYAKANNKPDEQKYGVLFEANNFYY
Template Known Secondary structure 



TB
TTT


TTT
SS

SB
BTTTTB
TT
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   97..100.........110.........120.........130.........140.........150.........160.........170......
 
   146...150.........160.........170... ......180.........190.........200.........210.
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Query Sequence  ALLLLQKEKLITLKEGKGLLPTALDITD. . . . . . . . . . . . . . NPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTG
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Template Sequence  TYFLFAAKGAAVFKEQDGTLDPNEIGLNSPEAVQGMNEVQKWFTEARLPQSLKADTVNGLFKSGKVAAVINGPWAIKDYQ
Template Known Secondary structure  TTTT

S
SSSS

TTSTS


TT

TT

GGG
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   177..180.........190.........200.........210.........220.........230.........240.........250......
 
   212.......220. ........230.........240.........250.........260.........270..
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Query Sequence  LSPVHDSVFI. . . . . . . EDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETIFNGGAVPGW
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Template Sequence  AAGINVGVAPLPKIDGKDAQTFIGVKGWYLSAYSKYPKYATELMQFLTSKEALASRFKE. . TGEIPPQ
Template Known Secondary structure  TT




BSSSS



TT
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B
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   257..260.........270.........280.........290.........300.........310..... ....320..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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