Job Description P04846 Confidence 98.44% Date Thu Jan 5 10:58:24 GMT 2012 Rank 97 Aligned Residues 210 % Identity 13% Template c2ylnA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation Resolution 1.12 Å

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		30	.	.	.	.	.	.	.	.	.												40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	K	H	I	K	V	G	V	I	.	.	.	.	.	.	.	.	.	.	.	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q
Query Conservation												.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																																																			.
Template Sequence		N	K	G	T	V	T	V	G	T	E	G	T	Y	A	P	F	T	Y	H	D	K	D	G	K	L	T	G	Y	D	V	E	V	T	R	A	V	A	E	K	L	G	V	K	V	E	F	K	E	T	.	Q	W	D	S	M	M	A	G	L	K	A	G	R	F	D	V	V	A	N	Q	V	G	L	T	S	P	E	R	Q	A
Template Known Secondary structure			T									S			T	T	T					T	T	S				S														T									.		G	G	G								T	S		S				S	S					S
Template Predicted Secondary structure																																																			.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	G	Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L
Query Conservation
Alig confidence			.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	.	.	F	D	K	S	E	P	Y	S	W	S	G	A	V	L	V	A	H	N	D	S	N	I	K	S	I	A	D	I	K	G	V	K	T	A	Q	S	L	T	S	N	Y	G	E	K	A	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	A	Q
Template Known Secondary structure			.	.					S		S											T	T		S			S	G	G	G		T	T	S						T	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure			.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																											.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																				.	.	.																																								.	.	.	.
Query SS confidence																																				.	.	.																																								.	.	.	.
Query Sequence		Q	I	M	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	.	.	.	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	.	.	.	.
Query Conservation																																				.	.	.																																								.	.	.	.
Alig confidence																																				.	.	.																										.	.													.	.	.	.
Template Conservation																																																																.	.
Template Sequence		L	V	P	V	D	G	L	A	Q	S	L	T	L	I	E	Q	K	R	A	D	A	T	L	N	D	E	L	A	V	L	D	Y	L	K	K	N	P	N	A	G	V	K	I	V	W	S	A	P	A	D	E	K	V	G	S	G	L	I	V	N	K	G	.	.	N	D	E	A	V	A	K	F	S	T	A	I	N	E	L	K
Template Known Secondary structure						S	S										T	T	S																		S	T	T	S	S									G	G	G										S	S	.	.
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	P	E	V	A	K	A	A	E	T	I	F	N	G	G	A	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	G	T	L	K	K	L	G	E	Q	F	F	G	K	D	I	S	V
Template Known Secondary structure			T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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