Job Description P04846 Confidence 96.83% Date Thu Jan 5 10:58:24 GMT 2012 Rank 169 Aligned Residues 204 % Identity 11% Template c2yjpB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the solute receptors for l-cysteine of2 neisseria gonorrhoeae Resolution 2.26 Å

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		32	.	.	.	.	.	.	.												40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.																									.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.																									.	.
Query Sequence		K	H	I	K	V	G	V	I	.	.	.	.	.	.	.	.	.	.	.	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	.	.	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q
Query Conservation										.	.	.	.	.	.	.	.	.	.	.																									.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.																									.	.																													.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		G	V	I	R	I	G	V	F	G	D	K	P	P	F	G	Y	V	D	A	N	G	K	N	Q	G	F	D	V	E	I	A	K	D	L	A	K	D	L	L	G	S	P	D	K	V	E	F	V	L	T	E	A	A	N	R	V	E	Y	V	R	S	G	K	V	D	L	I	L	A	N	F	T	Q	.	.	.	T	P	E	R
Template Known Secondary structure		T								S			T	T	T					T	T	S				S															S	S	G	G	G								G	G	G							T	T	S		S				S	S		B		.	.	.		T	T	G
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	G	Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	A	V	D	F	A	D	P	Y	M	K	V	A	L	G	V	V	S	P	K	N	K	P	I	T	D	M	A	Q	L	K	D	Q	T	L	L	V	N	K	G	T	T	A	D	A	F	F	T	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	E	V	K
Template Known Secondary structure		G	G	T					S													T	T	S				S	G	G	G	T	T	T	S						T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																									.	.	.	.	180
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		Q	I	M	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	.	.	.	.	Q	S	P
Query Conservation																																																																											.	.	.	.
Alig confidence																																																													.	.													.	.	.	.
Template Conservation																																																													.	.
Template Sequence		L	L	K	F	D	Q	N	T	E	T	F	D	A	L	K	D	G	R	G	V	A	L	A	H	D	N	A	L	L	W	A	W	A	K	E	N	P	N	F	E	V	A	I	G	N	L	G	P	A	E	F	I	A	P	A	V	Q	K	G	.	.	N	A	D	L	L	N	W	V	N	G	E	I	A	A	M	K	K	D	G
Template Known Secondary structure						S	S										T	T	S	S	S																	T	T								S	S	S										T	T	.	.																			S
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	A	K	A	A	E	T	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	K	A	A	Y	E	K	T	L
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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