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Job DescriptionP04846
Confidence93.42%DateThu Jan 5 10:58:24 GMT 2012
Rank191Aligned Residues88
% Identity14%Templatec2w7yA_
PDB info PDB header:sugar-binding proteinChain: A: PDB Molecule:probable sugar abc transporter, sugar-binding PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide.
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   183......190.........200.........210.........220......... 230.........240.........250........
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Query Sequence  LEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKNSPYV. . . . NILVAREDNKNAENVKEFLQSYQSPEVAK
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Template Sequence  GDANAYSKDFQEGKSAVFFNGVWASGEXSKNPSLAPGIYPAGVAISSSGGGITISSKXSEAKQKLALEFLKYXTSDDVQK
Template Known Secondary structure  B
TTS


GGGTTSTT
BGGG



BSSS
TS
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   258.260.........270.........280.........290.........300.........310.........320.........330.......
 
   259260.........270..
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Query Sequence  AAETIFNGGAVPGW
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Template Sequence  VIFEK. . VGANPSN
Template Known Secondary structure  T..S
S
BS
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   338.340.. .......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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