Job Description P04846 Confidence 98.19% Date Thu Jan 5 10:58:24 GMT 2012 Rank 122 Aligned Residues 199 % Identity 11% Template c2rc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution Resolution 1.96 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.											70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	G	.	.	.	.	.	.	.	.	.	.	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	G	Y	K	L	V	A	V	G	N	T	F	V	F	P	M
Query Conservation																										.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																																																											.
Template Sequence		Y	C	I	D	L	L	E	Q	L	A	E	D	M	N	F	D	F	D	L	Y	I	V	G	D	G	K	Y	G	A	W	K	N	G	H	W	T	G	L	V	G	D	L	L	S	G	T	A	N	M	A	V	T	S	F	S	I	N	.	T	A	R	S	Q	V	I	D	F	T	S	P	F	F	S	T	S	L	G	I	L	V
Template Known Secondary structure															T									T	T								T	T												T	S		S				S	S		B			.					T	T	S				S		S
Template Predicted Secondary structure																																																											.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		A	G	Y	S	K	K	I	K	T	V	A	Q	I	.	.	.	.	.	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A	Q	L	P	R
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	T	R	G	T	E	L	S	G	I	H	D	P	K	L	H	H	P	S	Q	G	F	R	F	G	T	V	R	E	S	S	A	E	D	Y	V	R	Q	S	F	P	E	M	H	E	Y	M	R	R	Y	N	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	P	D	G	V	Q
Template Known Secondary structure			T	T	S					S	T	T						S			T	T						B	T	T	S																		G	G	G		B	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.																					.	.	.	.	.	.	.
		191	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure							.	.																						.																																							.
Query SS confidence							.	.																						.																																							.
Query Sequence		V	L	D	D	P	.	.	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	.	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	Q	S	P	.	E	V	A	K	A	A	E	T	I	F	N
Query Conservation							.	.																						.																																							.
Alig confidence							.	.																						.																																							.
Template Conservation
Template Sequence		Y	L	K	N	D	P	E	K	L	D	A	F	I	M	D	K	A	L	L	D	Y	E	V	S	I	D	A	D	C	K	L	L	T	V	G	K	P	F	A	I	E	G	Y	G	I	G	L	P	P	N	S	P	L	T	S	N	I	S	E	L	I	S	Q	Y	K	S	H	G	F	M	D	V	L	H	D	K	W	Y	K
Template Known Secondary structure					S	S	S				S																	S	S							S														T	T		T	T														T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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