Job Description P04846 Confidence 98.42% Date Thu Jan 5 10:58:24 GMT 2012 Rank 101 Aligned Residues 204 % Identity 11% Template c2pyyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:ionotropic glutamate receptor bacterial homologue; PDBTitle: crystal structure of the glur0 ligand-binding core from nostoc2 punctiforme in complex with (l)-glutamate Resolution 2.10 Å

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		33	.	.	.	.	.	.	40							.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.
Query Sequence		H	I	K	V	G	V	I	N	.	.	.	.	.	.	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	G	Y	K	L	V	A
Query Conservation										.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																																																											.	.	.
Template Conservation																																																																										.	.	.
Template Sequence		P	L	L	V	A	T	R	V	I	P	P	F	V	L	S	N	L	S	G	F	S	I	D	L	W	R	S	I	A	T	Q	I	G	I	E	S	K	L	I	E	Y	S	S	V	P	E	L	I	S	A	I	K	D	N	K	V	N	L	G	I	A	A	I	S	I	T	A	E	R	E	Q	N	.	.	.	F	D	F	S	L
Template Known Secondary structure										B	T	T	T	B	B				B	S														T									S	S										T	T	S	S	S				S	S		B									.	.	.	S				S
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.	80
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	N	T	F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A
Query Conservation
Alig confidence																									.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	I	F	A	S	G	L	Q	I	M	V	R	N	G	D	I	R	S	I	D	D	L	P	.	G	K	V	V	A	T	T	A	G	S	T	A	A	T	Y	L	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	H	I	S	V	L	E	V	P	K	I	E
Template Known Secondary structure			S																S	G	G	G		T	.	T	S						T	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							S	S
Template Predicted Secondary structure																									.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.																											.	.	.	.	.	130	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	.	.	.	.	Q	S	P	E	V	A	K	A	A	E	T
Query Conservation																																																																			.	.	.	.
Alig confidence																																																					.	.													.	.	.	.
Template Conservation																																																					.	.
Template Sequence		E	A	Y	K	A	L	Q	T	K	K	A	D	A	V	V	F	D	A	P	V	L	L	F	Y	A	A	N	E	G	K	G	K	V	E	I	V	G	S	I	L	R	E	E	S	Y	G	I	I	L	P	N	.	.	N	S	P	Y	R	K	P	I	N	Q	A	L	L	N	L	K	E	N	G	T	Y	Q	S	L	Y	D	K
Template Known Secondary structure									T	T	S	S	S														T	T	T	T	T	T	T																			T	.	.	T		T	T														T	S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		263	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	N	G	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	F	D	P	K	N
Template Known Secondary structure			S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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