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Job DescriptionP04846
Confidence98.42%DateThu Jan 5 10:58:24 GMT 2012
Rank101Aligned Residues204
% Identity11%Templatec2pyyB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:ionotropic glutamate receptor bacterial homologue; PDBTitle: crystal structure of the glur0 ligand-binding core from nostoc2 punctiforme in complex with (l)-glutamate
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40 .........50.........60.........70.........80.........90.........100......
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Query Sequence  HIKVGVIN. . . . . . GAEQDVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGYKLVA
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Template Sequence  PLLVATRVIPPFVLSNLSGFSIDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQN. . . FDFSL
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BTTTBB


BST

SSTTSSSSS
B

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   4.....10.........20.........30.........40.........50.........60.........70..... ....80
 
   107..110.........120.........130.........140.........150.........160.........170.........180......
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Query Sequence  VGNTFVFPMAGYSKKIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGA
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Template Sequence  PIFASGLQIMVRNGDIRSIDDLP. GKVVATTAGSTAATYLRE. . . . . . . . . . . . . . . . . . . . . . . . . . HHISVLEVPKIE
Template Known Secondary structure 
S





SGGG
T.TSTTS..........................TT
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   84.....90.........100...... ...110.........120.... .....130......
 
   187..190.........200.........210.........220.........230.........240.........250. ........260..
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Query Sequence  QLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKNSPYVNILVAREDNKNAENVKEFLQSY. . . . QSPEVAKAAET
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Template Sequence  EAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPN. . NSPYRKPINQALLNLKENGTYQSLYDK
Template Known Secondary structure  TTSSSTTTTTTT



T..T
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   140.........150.........160.........170.........180.........190 .........200.........210.......
 
   263.....
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Query Sequence  IFNGGA
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Template Sequence  WFDPKN
Template Known Secondary structure  S
GGG
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   218.220...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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