Job Description P04846 Confidence 97.80% Date Thu Jan 5 10:58:24 GMT 2012 Rank 139 Aligned Residues 236 % Identity 16% Template c2fncA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose. Resolution 1.70 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																								.	.	.													.																			.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.													.																			.	.	.	.	.	.	.	.
Query Sequence		H	I	K	V	G	V	I	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	G	S	.	.	.	L	L	P	N	D	A	T	N	H	G	E	L	.	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.													.																			.	.	.	.	.	.	.	.
Alig confidence						.																																		.	.	.													.																			.	.	.	.	.	.	.	.
Template Conservation						.
Template Sequence		K	L	T	I	.	W	C	S	E	K	Q	V	D	I	L	Q	K	L	G	E	E	F	K	A	K	Y	G	I	P	V	E	V	Q	Y	V	D	F	G	S	I	K	S	K	F	L	T	A	A	P	Q	G	Q	G	A	D	I	I	V	G	A	H	D	W	V	G	E	L	A	V	N	G	L	I	E	P	I	P	N	F	S
Template Known Secondary structure						.																						S																					G	G	G	T		S		S						G	G	G							T	T		B							G
Template Predicted Secondary structure						.
Template SS confidence
		6	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
																						101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.											130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	.	.	.	.	.	.	.	.	.	.	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	K	N	F	Y	D	T	A	L	K	A	F	S	Y	G	G	K	L	Y	G	V	P	Y	A	M	E	A	V	A	L	I	Y	N	K	D	Y	V	D	S	V	P	K	T	M	D	E	L	I	E	K	A	K	Q	I	D	E	E	Y	G	G	E	V	R	G	F	I	Y	D	V	A	N	F	Y	F	S	A	P	F	I
Template Known Secondary structure		G	G	G	G	B								T			T	T																		T	T	T		S	S			S	B															T	T	T	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		151	.	.	.	.	.															.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	K	E	K	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	Y	G	G	Y	V	F	K	E	T	P	Q	G	L	D	V	T	D	I	G	L	A	N	E	G	A	V	K	G	A	K	L	I	K	R	M	I	D	E	G	V	L	T	P	G	D	N	Y	G	T	M	D	S	M	F	K	E	G	L	A	A	M	I	I	N	G	L	W	A	I	K	S	Y	K	D	A	G	I	N
Template Known Secondary structure				T	T								T	T									T	T	S																T	T	S	S		T	T												T	T									G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.									.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure													.	.	.	.	.	.	.	.																						.
Query SS confidence													.	.	.	.	.	.	.	.																						.
Query Sequence		D	S	V	F	I	E	D	K	N	S	P	.	.	.	.	.	.	.	.	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	.	Q	S	Y	Q	S	P	E	V	A	K	A	A	E	T	I	F	N	G	G	A	V	P	G
Query Conservation													.	.	.	.	.	.	.	.																						.
Alig confidence													.	.	.	.	.	.	.	.																						.																.	.
Template Conservation																																																										.	.
Template Sequence		Y	G	V	A	P	I	P	E	L	E	P	G	V	P	A	K	P	F	V	G	V	Q	G	F	M	I	N	A	K	S	P	N	K	V	I	A	M	E	F	L	T	N	F	I	A	R	K	E	T	M	Y	K	I	Y	L	A	.	.	D	P	R	L	P	A
Template Known Secondary structure									B	S	B	T	T	B														B	T	T		T	T											T	T	T	S											.	.	S		S			S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions