Job Description P04846 Confidence 90.81% Date Thu Jan 5 10:58:24 GMT 2012 Rank 196 Aligned Residues 197 % Identity 10% Template c2f78A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate Resolution 2.05 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																												.																																									.
Query SS confidence																												.																																									.
Query Sequence		H	I	K	V	G	V	I	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	.	G	L	D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	.	A	H	G	Y	K	L	V	A	V	G	N	T
Query Conservation																												.																																									.
Alig confidence																												.										.																															.
Template Conservation																																						.
Template Sequence		T	I	R	I	G	F	V	G	S	L	L	F	G	L	L	P	R	I	I	H	L	Y	R	Q	A	H	P	N	L	R	I	E	L	Y	E	M	.	G	T	K	A	Q	T	E	A	L	K	E	G	R	I	D	A	G	F	G	R	L	K	I	S	D	P	A	I	K	R	T	L	L	R	N	E	R	L	M	V	A	V	H
Template Known Secondary structure									G	G	G	G	G	T	T													T	T									.												T	S		S					S						T	T
Template Predicted Secondary structure																																						.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A	Q	L	P	R
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	H	P	L	N	Q	M	K	D	K	G	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	P	T	K	I	N	E	V	R	E	V	Q	L	A	L	G
Template Known Secondary structure		T	T	S	G	G	G	G	G	T	T	T		B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T				S	S					S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.																		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y
Query Conservation
Alig confidence															.	.	.																																.
Template Conservation															.	.	.																																.
Template Sequence		L	V	A	A	G	E	G	I	S	L	V	P	A	.	.	.	S	T	Q	S	I	Q	L	F	N	L	S	Y	V	P	L	L	D	P	D	A	I	T	P	I	Y	I	A	V	R	N	M	.	E	E	S	T	Y	I	Y	S	L	Y	E	T	I
Template Known Secondary structure						T	S		B					G	.	.	.	G	G	G	G				T	T						B			T	T											S	S	.
Template Predicted Secondary structure															.	.	.																																.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions