Job Description P04846 Confidence 98.04% Date Thu Jan 5 10:58:24 GMT 2012 Rank 131 Aligned Residues 216 % Identity 12% Template c2dvzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter Resolution 2.30 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																						.																				.	.																		.	.	.	.
Query SS confidence																						.																				.	.																		.	.	.	.
Query Sequence		S	S	D	A	K	H	I	K	V	G	V	I	N	G	A	E	Q	D	V	A	.	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	.	.	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	.	.	.	.	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H
Query Conservation																						.																				.	.																		.	.	.	.
Alig confidence																						.																				.	.																		.	.	.	.
Template Conservation
Template Sequence		P	S	K	A	I	R	V	I	V	P	F	A	P	G	G	S	T	D	I	I	A	R	L	V	T	Q	R	X	S	Q	E	L	G	Q	P	X	V	V	E	N	K	G	G	A	G	G	A	I	G	A	S	E	A	A	R	A	E	P	D	G	Y	T	L	S	I	A	T	V	S	T	X	A	V	N	P	A	C	R	P	K
Template Known Secondary structure			S	S							S	S		T	T	S																		T	S										G	G	G										S		T	T	S	S											T						S	T	T
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		101	.							.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure				.	.	.	.	.	.																	.	.	.											.	.	.	.	.	.	.										.
Query SS confidence				.	.	.	.	.	.																	.	.	.											.	.	.	.	.	.	.										.
Query Sequence		G	Y	.	.	.	.	.	.	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	.	.	.	S	K	K	I	K	T	V	A	Q	I	.	.	.	.	.	.	.	K	E	G	A	T	V	A	I	P	.	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G
Query Conservation				.	.	.	.	.	.																	.	.	.											.	.	.	.	.	.	.										.
Alig confidence				.	.	.	.	.	.																	.	.	.											.	.	.	.	.	.	.										.																			.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		D	L	P	Y	D	P	I	K	D	F	Q	P	V	T	N	F	A	N	T	A	N	V	V	A	V	N	P	K	F	P	A	K	D	F	K	G	F	L	E	E	L	K	K	N	P	G	K	Y	S	Y	G	S	S	G	T	C	G	V	L	H	L	X	G	E	S	F	K	X	A	T	G	T	.	.	.	.	.	.	.	.
Template Known Secondary structure		T		S			T	T	T	S																		T	T	S	S		S	S										T	S	T	T	T						S		T	T	S														T		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																				.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	.	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.						.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	V	H	V	P	Y	K	G	S	G	P	A	V	A	D	A	V	G	G	Q	I	E	L	I	F	D	N	L	P	S	S	X	P	Q	I	Q	A	G	K	L	R	A	X	A	I	A	W	P	T	R	I	D	A	I	K	D	V	P	T	F	A	D	A	G	F	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.								S	S											T	S	S	S															T	T	S	S							S	S	S			G	G	G	T	T	S		B	T	T	T	T	T		G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
						227	.	.	230	.	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure		.	.	.	.															.	.	.
Query SS confidence		.	.	.	.															.	.	.
Query Sequence		.	.	.	.	P	Y	V	N	I	L	V	A	R	E	D	N	K	N	.	.	.	A	E	N	V	K	E	F	L	Q	S	Y	Q	S	P	E	V	A	K	A	A	E	T	I	F
Query Conservation		.	.	.	.															.	.	.
Alig confidence		.	.	.	.															.	.	.
Template Conservation
Template Sequence		V	L	N	Q	P	V	W	Y	G	L	L	A	P	K	G	T	P	X	D	V	V	N	K	L	R	D	A	A	V	V	A	L	K	D	P	K	V	I	K	A	L	D	D	Q	G
Template Known Secondary structure		G	G												T	T																		T												T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions