Return to main results Retrieve Phyre Job Id

Job DescriptionP0A6J1
Confidence98.74%DateThu Jan 5 11:03:15 GMT 2012
Rank134Aligned Residues166
% Identity13%Templatec3crqA_
PDB info PDB header:transferaseChain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.. .......70.........80.........90
Predicted Secondary structure 












.................








Query SS confidence 


































. . . . . . . . . . . . . . . . .



























Query Sequence  GVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLL. . . . . . . . . . . . . . . . . DGDNVRHGLCSDLGFSDADRKENIRRVG
Query Conservation    

 
 
  







  

  
         
.................                            
Alig confidence 


































.................



























Template Conservation 
 

 
 







 

  

     






 



 
 





   
   
 




     
  
   
   
 
Template Sequence  PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADAL
Template Known Secondary structure 

STTSSTTS


TTTTBTT

TTTT


S
SSS
B
TTS


Template Predicted Secondary structure 




































Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   91........100.........110.........120.........130.........140.........150.........160.........170
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  EVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPE
Query Conservation              
                          
 
    

   
   
                    
   
Alig confidence 














..






























































Template Conservation    
  
   
  


..



 


 


 
 
     
      
  
  

  

  
   


 

  
        
Template Sequence  AAMAKATARGRIPLL. . VGGTMLYYKALLEGLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHARSDLHA
Template Known Secondary structure  TT
..
S




S
SSTT
TT

T
Template Predicted Secondary structure 


..






















Template SS confidence 















































































   85....90......... 100.........110.........120.........130.........140.........150.........160..
 
   171.... ....180.........190.....
Predicted Secondary structure 


...........



Query SS confidence 




. . . . . . . . . . .



















Query Sequence  SAEIH. . . . . . . . . . . LNGEQLVTNLVQQLLDLLRQ
Query Conservation    

 ...........

   
  
 
  

  
  
Alig confidence 




...........



















Template Conservation        



 
   

 
     
        

 
Template Sequence  GLPSIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQ
Template Known Secondary structure  TSTGGGSTTTTSS
Template Predicted Secondary structure 









Template SS confidence 



































   248.250.........260.........270.........280...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions