Job Description P0A6J1 Confidence 98.11% Date Thu Jan 5 11:03:15 GMT 2012 Rank 206 Aligned Residues 146 % Identity 18% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	G	H	R	G	V	V	L	W	F	T	G	L	S	G	S	G	K	S	T	V	A	G	A	L	E	E	A	L	H	K	L	G	V	S	T	Y	L	L	D	G	D	N	V	R	H	G	L	C	S	D	L	G	F	S	D	A	D	R	K	E	N	I	R	R	V	G	E	V	A	N	L	M	V	E	A	G	L	V
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P
Template Known Secondary structure						S	S									T	T	S	S															T	T										S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.																		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		V	L	T	A	F	I	S	P	H	R	A	E	R	Q	M	.	V	R	E	R	V	G	E	G	R	F	I	E	V	F	V	D	T	P	L	A	I	C	E	A	R	D	P	K	G	L	Y	K	K	A	R	A	G	E	L	R	N	F	T	G	I	D	S	V	Y	E	A	P	E	S	A	E	I	H	L	N	G	E	Q	L
Query Conservation																	.
Alig confidence																	.																			.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	.	.	.	.	.	.	.	.	.	.	.	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	.	G	P	D	E	V	L	L	V	L	D	A	M	T	G
Template Known Secondary structure							T	T																		T		S								.	.	.	.	.	.	.	.	.	.	.			S	S																	.			S								S	S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.												190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	N	L	V	Q	Q	L	L	D	L	L	R	Q	N	D	I
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		Q	.	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V
Template Known Secondary structure		S	.													S
Template Predicted Secondary structure			.
Template SS confidence
		224		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions