Job Description P0AA37 Confidence 100.00% Date Thu Jan 5 11:11:49 GMT 2012 Rank 3 Aligned Residues 208 % Identity 38% Template c1v9fA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli Resolution 1.70 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.						.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																		.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.
Query Sequence		P	P	Q	E	P	W	L	V	I	L	Y	Q	D	D	H	I	M	V	V	N	K	P	S	G	L	L	S	V	P	G	R	L	E	E	H	K	D	S	V	M	T	R	I	Q	R	D	Y	P	.	.	.	.	.	Q	A	E	S	V	H	R	L	D	M	A	T	S	G	V	I	V	V	A	L	T	K	A	A	E	R	E
Query Conservation																																																		.	.	.	.	.
Alig confidence																																																		.	.	.	.	.
Template Conservation
Template Sequence		E	P	Q	D	I	P	L	D	I	V	Y	E	D	E	D	I	I	I	I	N	K	P	R	D	L	V	V	H	P	G	A	G	N	P	D	G	T	V	L	N	A	L	L	H	Y	Y	P	P	I	A	D	V	P	R	A	G	I	V	H	R	L	D	K	D	T	T	G	L	M	V	V	A	K	T	V	P	A	Q	T	R
Template Known Secondary structure															S	S								S	S			S	S		B	T	T	B	S	S	S	S										G	G	G	G	G	S	G	G	G	G	B						T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	R	Q	F	R	E	R	E	P	K	K	Q	Y	V	A	R	V	W	G	H	P	S	P	A	E	G	L	V	D	L	P	L	I	C	D	W	P	N	R	P	K	Q	K	V	C	Y	E	T	G	K	P	A	Q	T	E	Y	E	V	V	E	Y	A	A	D	N	T	A	R	V	V	L	K	P	I	T	G	R	S	H
Query Conservation
Alig confidence																								.																				.																							.
Template Conservation																								.																				.																							.
Template Sequence		L	V	E	S	L	Q	R	R	E	I	T	R	E	Y	E	A	V	A	I	G	H	M	.	T	A	G	G	T	V	D	E	P	I	S	R	H	P	T	K	R	T	H	.	M	A	V	H	P	M	G	K	P	A	V	T	H	Y	R	I	M	E	H	F	R	V	.	H	T	R	L	R	L	R	L	E	T	G	R	T	H
Template Known Secondary structure								T	T		S										S			.														S	S		T	T		.					T	T	S	B													S	S	.									S				T	T
Template Predicted Secondary structure																								.																				.																							.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190													.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	R	V	H	M	L	A	L	G	H	P	I	L	G	D	R	F	Y	A	S	P	E	A	R	A	M	A	.	.	.	.	.	.	.	.	.	.	.	.	P	R	L	L	L	H	A	E	M	L	T	I	T	H	P	A	Y	G	N	S	M	T	F	K	A	P	A	D
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	I	R	V	H	M	A	H	I	T	H	P	L	V	G	D	P	V	Y	G	G	R	P	R	P	P	K	G	A	S	E	A	F	I	S	T	L	R	K	F	D	R	Q	A	L	H	A	T	M	L	R	L	Y	H	P	I	S	G	I	E	M	E	W	H	A	P	I	P
Template Known Secondary structure										T	T			B	T	T		T	T	T	T							T	T														S		S											T	T	T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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