Job Description P75857 Confidence 100.00% Date Thu Jan 5 12:15:06 GMT 2012 Rank 1 Aligned Residues 773 % Identity 49% Template c3rfzB_ PDB info PDB header:cell adhesion/transport/chaperone Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis; PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate Resolution 2.80 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	T	P	G	V	Y	R	V	D	I	V	L	N	Q	T	I	V	D	T	R	N	V	N	F	V	E	I	T	P	E	K	G	I	A	A	C	L	T	T	E	S	L	D	A	M	G	V	N	T	D	A	F	P	A	F	K	Q	L	D	K	Q	A	C	V	P	L	A	E	I	I	P	D	A	S	V	T	F	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	P	P	G	T	Y	R	V	D	I	Y	L	N	N	G	Y	M	A	T	R	D	V	T	F	N	T	G	D	S	E	Q	G	I	V	P	C	L	T	R	A	Q	L	A	S	M	G	L	N	T	A	S	V	A	G	M	N	L	L	A	D	D	A	C	V	P	L	T	T	M	V	Q	D	A	T	A	H	L	D	V
Template Known Secondary structure															T	T														S	S	T	T	S													T	T	B		G	G	G	S	T	T	T	T	T	S		S	S									S	T	T							T
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	L	R	L	E	I	S	V	P	Q	I	A	I	K	S	N	A	R	G	Y	V	P	P	E	R	W	D	E	G	I	N	A	L	L	L	G	Y	S	F	S	G	A	N	S	I	H	S	S	A	D	S	D	S	G	D	S	Y	F	L	N	L	N	S	G	V	N	L	G	P	W	R	L	R	N	N	S	T	W	S
Query Conservation
Alig confidence																																																			.	.
Template Conservation																																																			.	.
Template Sequence		G	Q	Q	R	L	N	L	T	I	P	Q	A	F	M	S	N	R	A	R	G	Y	I	P	P	E	L	W	D	P	G	I	N	A	G	L	L	N	Y	N	F	S	G	N	S	V	Q	N	R	I	.	.	G	G	N	S	H	Y	A	Y	L	N	L	Q	S	G	L	N	I	G	A	W	R	L	R	D	N	T	T	W	S
Template Known Secondary structure		T	T	T								G	G	G	B	S			S	T	T				G	G	G		B																				T	T	.	.	T																	T	T
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	S	G	Q	T	A	E	W	K	N	L	S	S	Y	L	Q	R	A	V	I	P	L	K	G	E	L	T	V	G	D	D	Y	T	A	G	D	F	F	D	S	V	S	F	R	G	V	Q	L	A	S	D	D	N	M	L	P	D	S	L	K	G	F	A	P	V	V	R	G	I	A	K	S	N	A	Q	I	T	I	K
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence		Y	N	S	N	.	.	.	K	W	Q	H	I	N	T	W	L	E	R	D	I	I	P	L	R	S	R	L	T	L	G	D	G	Y	T	Q	G	D	I	F	D	G	I	N	F	R	G	A	Q	L	A	S	D	D	N	M	L	P	D	S	Q	R	G	F	A	P	V	I	H	G	I	A	R	G	T	A	Q	V	T	I	K
Template Known Secondary structure						.	.	.														T	T	T	T												S	S	S	S														G	G	G	S		G	G	G	S	S										S	S	S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		185	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	G	Y	T	I	Y	Q	T	Y	V	S	P	G	A	F	E	I	S	D	L	Y	S	T	S	S	S	G	D	L	L	V	E	I	K	E	A	D	G	S	V	N	S	Y	S	V	P	F	S	S	V	P	L	L	Q	R	Q	G	R	I	K	Y	A	V	T	L	A	K	Y	R	T	N	S	N	E	Q	Q	E	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	N	G	Y	D	I	Y	N	S	T	V	P	P	G	P	F	T	I	N	D	I	Y	A	A	G	N	S	G	D	L	Q	V	T	I	K	E	A	D	G	S	T	Q	I	F	T	V	P	Y	S	S	V	P	L	L	Q	R	E	G	H	T	R	Y	S	I	T	A	G	E	Y	R	S	G	N	A	Q	Q	E	K	P	R
Template Known Secondary structure			T	T										S												T	T	S										S	S	S													T	T				T	T														S		T	T	B
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	Q	A	T	L	Q	W	G	G	P	W	G	T	T	W	Y	G	G	G	Q	Y	A	E	Y	Y	R	A	A	M	F	G	L	G	F	N	L	G	D	F	G	A	I	S	F	D	A	T	Q	A	K	S	T	L	A	D	Q	S	E	H	K	G	Q	S	Y	R	F	L	Y	A	K	T	L	N	H	L	G	T	N	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	F	Q	S	T	L	L	H	G	L	P	A	G	W	T	I	Y	G	G	T	Q	L	A	D	R	Y	R	A	F	N	F	G	I	G	K	N	M	G	A	L	G	A	L	S	V	D	M	T	Q	A	N	S	T	L	P	D	D	S	Q	H	D	G	Q	S	V	R	F	L	Y	N	K	S	L	N	E	S	G	T	N	I
Template Known Secondary structure												G	G	G											T	T														T	T															T	T	S																		T	T	S
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	M	G	Y	R	Y	S	T	S	G	F	Y	T	L	S	D	T	M	Y	K	H	M	D	G	Y	E	F	N	D	G	D	D	E	D	T	P	M	W	S	R	Y	Y	N	L	F	Y	T	K	R	G	K	L	Q	V	N	I	S	Q	Q	L	G	E	Y	G	S	F	Y	L	S	G	S	Q	Q	T	Y	W	H	T	D
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	V	G	Y	R	Y	S	T	S	G	Y	F	N	F	A	D	T	T	Y	S	R	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	L	A	Y	N	K	R	G	K	L	Q	L	T	V	T	Q	Q	L	G	R	T	S	T	L	Y	L	S	G	S	H	Q	T	Y	W	G	T	S
Template Known Secondary structure											T	T									B	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S															S	S	S													S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.																			.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	D	R	L	L	Q	F	G	Y	N	T	Q	I	K	D	L	S	L	G	I	S	W	N	Y	S	K	S	R	G	Q	P	D	A	D	Q	V	F	A	L	N	F	S	L	P	L	N	L	L	L	P	R	S	N	D	S	Y	T	R	K	K	N	Y	A	W	M	T	S	N	T	S	I	D	N	E	G	H	T	T	Q
Query Conservation
Alig confidence																																																										.	.	.
Template Conservation																																																										.	.	.
Template Sequence		N	V	D	E	Q	F	Q	A	G	L	N	T	A	F	E	D	I	N	W	T	L	S	Y	S	L	T	K	N	A	W	Q	K	G	R	D	Q	M	L	A	L	N	V	N	I	P	F	S	H	W	L	R	S	D	S	K	S	.	.	.	Q	W	R	H	A	S	A	S	Y	S	M	S	H	D	L	N	G	R	M	T	N
Template Known Secondary structure																T	T													S	S	S		S													S	G	G	G	S		T	T			S	.	.	.	G	G	G	G											S	S	S
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.				.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
		622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.				.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		N	L	G	L	T	E	T	L	L	D	D	G	N	L	S	Y	S	V	Q	Q	G	Y	.	.	.	N	S	E	G	K	T	A	N	G	S	A	S	M	D	Y	K	G	A	F	A	D	A	R	V	G	Y	N	Y	S	D	N	G	S	Q	Q	Q	L	N	Y	A	L	S	G	S	L	V	A	H	S	Q	G	I	T	L	G
Query Conservation																								.	.	.
Alig confidence																								.	.	.																													.	.
Template Conservation																																																							.	.
Template Sequence		L	A	G	V	Y	G	T	L	L	E	D	N	N	L	S	Y	S	V	Q	T	G	Y	A	G	G	G	D	G	N	S	G	S	T	G	Y	A	T	L	N	Y	R	G	G	Y	G	N	A	N	I	G	Y	S	H	.	.	S	D	D	I	K	Q	L	Y	Y	G	V	S	G	G	V	L	A	H	A	N	G	V	T	L	G
Template Known Secondary structure										S	T	T														S	T	T	T															S	S										.	.		S	S																T	T
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		589	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.			.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	L	G	E	T	N	V	L	I	A	A	P	G	A	E	N	T	R	V	A	N	S	T	G	L	K	T	D	W	R	G	Y	T	V	V	P	Y	A	T	S	Y	R	E	N	R	I	A	L	D	A	A	S	L	K	R	N	V	D	L	E	N	A	V	V	N	V	V	P	T	K	G	A	L	V	L	A	E	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	P	L	N	D	T	V	V	L	V	K	A	P	G	A	K	D	A	K	V	E	N	Q	T	G	V	R	T	D	W	R	G	Y	A	V	L	P	Y	A	T	E	Y	R	E	N	R	V	A	L	D	T	N	T	L	A	D	N	V	D	L	D	N	A	V	A	N	V	V	P	T	R	G	A	I	V	R	A	E	F	K
Template Known Secondary structure		S				S	S							T	T			S		B	B	T	T	S	T	T		B			T	T	S					S				T	T	S						B		G	G	G	S		T	T				S		S						B		T	T
Template Predicted Secondary structure
Template SS confidence
		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.
		779	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	A	G	A	R	V	L	M	K	T	S	K	Q	G	I	P	L	R	F	G	A	I	A	T	L	D	G	V	Q	A	N	S	G	I	I	D	D	D	G	S	L	Y	M	A	G	L	P	A	K	G	T	I	S	V	R	W	G	E	A	P	D	Q	I	C	H	I	N	Y	E	L	T	E	Q	Q	I	N	S	A	I
Query Conservation
Alig confidence																											.																																			.	.	.
Template Conservation																											.																																			.	.	.
Template Sequence		A	R	V	G	I	K	L	L	M	T	L	T	H	N	N	K	P	L	P	F	G	A	M	V	T	.	S	E	S	S	Q	S	S	G	I	V	A	D	N	G	Q	V	Y	L	S	G	M	P	L	A	G	K	V	Q	V	K	W	G	E	A	.	.	.	H	C	V	A	N	Y	Q	L	P	P	E	S	Q	Q	Q	L	L
Template Known Secondary structure					S										T	T					T	T					.		S	S	S	S							G	G	G									S								S				.	.	.										G	G	G	S	S		S
Template Predicted Secondary structure																											.																																			.	.	.
Template SS confidence
		747	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.		.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.				.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.
		859	860	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	M	D	A	I	C	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q	L	S	A	E	C	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		826	.	.	.	830	.	.	.