Job Description P76389 Confidence 99.55% Date Thu Jan 5 12:22:30 GMT 2012 Rank 70 Aligned Residues 182 % Identity 14% Template c2qlvF_ PDB info PDB header:transferase/protein binding Chain: F: PDB Molecule:nuclear protein snf4; PDBTitle: crystal structure of the heterotrimer core of the s.2 cerevisiae ampk homolog snf1 Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		N	Q	Q	I	F	N	P	Q	E	R	R	M	I	E	R	V	L	N	L	.	N	Q	R	T	V	S	S	I	M	T	S	R	H	D	I	E	H	I	D	L	N	A	P	E	E	E	I	R	Q	L	L	E	R	N	Q	H	T	R	L	V	V	T	D	G	D	D	A	E	D	L	L	G	V	V	H	V	I	D	L	L
Query Conservation																					.
Alig confidence																					.																																															.
Template Conservation																																																																				.
Template Sequence		S	Q	E	K	V	S	I	E	Q	Q	L	A	V	E	S	I	R	K	F	L	N	S	K	T	S	Y	D	V	L	P	V	S	Y	R	L	I	V	L	D	T	S	L	L	V	K	K	S	L	N	V	L	L	Q	N	S	I	V	S	A	P	L	W	D	S	K	T	.	S	R	F	A	G	L	L	T	T	T	D	F	I
Template Known Secondary structure			T	T																			T		B	G	G	G	G	S		S	S								T	T	S	B											T	T		S							T	T	T	.	T
Template Predicted Secondary structure																																																																				.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.																					.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	S	L	R	G	E	P	L	N	L	R	V	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	P	L	V	F	P	E	T	L	P	L	L	P	A	L	E	Q	F	R	N	A	R	T	H	F	A	F	V	V	D	E	F	G	S	V	E	G	I	V	T	L	S	D	V
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	I	Q	Y	Y	F	S	N	P	D	K	F	E	L	V	D	K	L	Q	L	D	G	L	K	D	I	E	R	A	L	G	V	D	Q	L	D	T	A	S	I	H	P	S	R	P	L	F	E	A	C	L	K	M	L	E	S	R	S	G	R	I	P	L	I	D	Q	R	E	I	V	V	S	V	L	T	Q	Y	R	I
Template Known Secondary structure												S							S		B	S	T	T								S	S									B		T	T	S	B									T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.		.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		T	E	T	I	A	G	N	L	P	N	E	V	E	E	I	D	A	R	H	D	I	Q	K	N	A	D	.	G	S	W	T	A	N	G	H	M	P	L	E	D	L	V	Q	Y	V
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		L	K	F	V	A	L	N	C	R	E	T	H	F	L	K	I	P	I	G	D	L	N	I	I	T	Q	D	N	M	K	S	C	Q	M	T	T	P	V	I	D	V	I	Q	M	L
Template Known Secondary structure										G	G	G	G	G			S	B	G	G	G	T	T	T	S	B		S	S				B		T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions