Phyre 2 alignment of P77650 with d2iida1

Job Description P77650
Confidence 99.80% Date Thu Jan 5 12:31:22 GMT 2012

Rank 111 Aligned Residues 290

% Identity 12% Template d2iida1

SCOP info FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.
Query Sequence	K	E	K	T	I	I	I	V	G	G	G	Q	A	A	A	M	A	A	A	S	L	R	Q	Q	G	F	T	G	E	L	H	L	F	S	D	E	R	H	L	P	Y	E	R	P	P	L	S	K	S	M	.	.	.	.	.	.	L	L	E	D	S	P	Q	L	Q	Q	V	L	P	A	N	W	W	Q	E	N	N	V	H	L
Query Conservation																																																			.	.	.	.	.	.
Alig confidence																											.	.																							.	.	.	.	.	.																								.
Template Conservation																											.	.																																																				.
Template Sequence	N	P	K	H	V	V	I	V	G	A	G	M	A	G	L	S	A	A	Y	V	L	A	G	A	G	H	.	.	Q	V	T	V	L	E	A	S	E	R	P	G	G	R	V	R	T	Y	R	N	E	E	A	G	W	Y	A	N	L	G	P	M	R	L	P	E	K	H	R	I	V	R	E	Y	I	R	K	F	D	L	R	.
Template Known Secondary structure	S										B														T		.	.							S	S	S	S	S	B	T	T							T	T	T	T					S	S						T	T											T	T			.
Template Predicted Secondary structure																											.	.																																																				.
Template SS confidence
	32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.

	76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																								.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	H	S	G	V	T	I	K	T	L	G	R	D	T	R	E	L	V	L	T	N	G	E	S	W	H	W	D	Q	L	F	I	A	T	G	A	A	A	R	P	L	P	L	L	D	A	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	C	F	T	L	R	H	A	G
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.
Template Sequence	.	.	.	.	L	N	E	F	S	Q	E	N	D	N	A	W	Y	F	I	K	N	I	R	K	K	V	G	E	V	K	K	D	P	G	L	L	K	Y	P	V	K	P	S	E	A	G	K	S	A	G	Q	L	Y	E	E	S	L	G	K	V	V	E	E	L	K	R	T	N	C	S	Y	I	L	N	K	Y	D	T	Y	S
Template Known Secondary structure	.	.	.	.						S			T	T	S					T	T												G	G	G	G						G	G	G	T	T											T										S										T	T	S	B
Template Predicted Secondary structure	.	.	.	.
Template SS confidence
					109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

	133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	A	A	R	L	R	E	V	L	Q	P	E	R	S	V	V	I	I	G	A	G	T	I	G	L	E	L	A	A	S	A	T	Q	R	R	C	K	V	T	V	I	E	L	A	A	T	V	M	G	R	N	A	P	P	P	V	Q	R	Y	L	L	Q	R	H	Q	Q	A	G	V	R	I	L	L	N	N	A	I	E	H	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence	T	K	E	Y	L	I	K	E	G	D	L	S	P	G	A	V	D	M	I	G	D	L	L	N	E	D	S	G	Y	Y	V	S	F	I	E	S	L	K	H	D	D	I	F	A	Y	E	K	R	F	D	E	I	V	D	G	M	D	K	L	P	T	A	M	Y	R	D	I	Q	D	K	V	H	F	N	A	Q	V	I	K	I
Template Known Secondary structure								T	S														T	T		G	G	G	T	T	S	B												T	T								T	T		T	T										T	G	G	G			S	S
Template Predicted Secondary structure
Template SS confidence
	185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

	213	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.													.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	D	G	E	K	V	E	L	T	L	.	.	.	.	.	Q	S	G	E	T	L	Q	A	D	V	V	I	Y	G	I	G	I	S	A	N	E	Q	L	A	R	E	A	N	L	.	.	.	.	.	.	.	.	.	.	.	.	D	T	A	N	G	I	V	I	D	E	A	C	R	T	C	D	P	A	I	F	A	G	G	D
Query Conservation											.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Q	Q	N	D	Q	K	V	T	V	V	Y	E	T	L	S	K	E	T	P	S	V	T	A	D	Y	V	I	V	C	T	T	S	R	A	V	R	L	I	K	F	N	P	P	L	L	P	K	K	A	H	A	L	R	S	V	F	T	P	Y	Q	F	Q	H	F	S	D	P	L	T	A	S	Q	G	R	I	Y	F	A	G	E
Template Known Secondary structure				S	S									S	S	S								S						S						T	T	S				S																T	T													B	T	T					S	G
Template Predicted Secondary structure
Template SS confidence
	265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	A	I	T	R	L	D	N	G	A	L	H	R	C	E	S	W	E	N	A	N	N	Q	A	Q	I	A	A	A	A	M
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.
Template Sequence	Y	T	A	Q	A	H	.	.	.	.	.	.	.	.	G	W	I	D	S	T	I	K	S	G	L	R	A	A	R	D	V
Template Known Secondary structure	G	G	S	S	S	S	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.
Template SS confidence
	458	.	460	.	.	.									.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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