Job Description P77650 Confidence 100.00% Date Thu Jan 5 12:31:22 GMT 2012 Rank 16 Aligned Residues 369 % Identity 22% Template c3kd9B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii Resolution 2.75 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	E	K	T	I	I	I	V	G	G	G	Q	A	A	A	M	A	A	A	S	L	R	Q	Q	G	F	T	G	E	L	H	L	F	S	D	E	R	H	L	P	Y	E	R	P	P	L	S	K	S	M	L	L	E	D	S	P	Q	L	Q	Q	V	L	P	A	N	W	W	Q	E	N	N	V	H	L	H	S	G	V	T
Query Conservation
Alig confidence				.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	.	.	K	V	V	I	I	G	G	G	A	A	G	M	S	A	A	S	R	V	K	R	L	K	P	E	W	D	V	K	V	F	E	A	T	E	W	V	S	E	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	K	R	G	I	D	L	H	L	N	A	E
Template Known Secondary structure				.	.								S															T	T	S							S	S	S						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T						T
Template Predicted Secondary structure				.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.			.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																								.	.	.	.	.	50	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																														.	.
Query SS confidence																				.																																														.	.
Query Sequence		I	K	T	L	G	R	D	T	R	E	L	V	L	T	N	G	E	S	.	W	H	W	D	Q	L	F	I	A	T	G	A	A	A	R	P	L	P	L	L	D	A	L	G	E	R	C	F	T	L	R	H	A	G	D	A	A	R	L	R	E	V	L	Q	P	.	.	E	R	S	V	V	I	I	G	A	G	T	I	G	L
Query Conservation																				.																																														.	.
Alig confidence																				.																																														.	.
Template Conservation
Template Sequence		V	I	E	V	D	T	G	Y	V	R	V	R	E	N	G	G	E	K	S	Y	E	W	D	Y	L	V	F	A	N	G	A	S	P	Q	V	P	A	I	E	G	V	N	L	K	G	V	F	T	A	D	L	P	P	D	A	L	A	I	R	E	Y	M	E	K	Y	K	V	E	N	V	V	I	I	G	G	G	Y	I	G	I
Template Known Secondary structure							T	T							T	T								S															S	B				S	T	T				S		S												T	T	S											S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	A	A	S	A	T	Q	R	R	C	K	V	T	V	I	E	L	A	A	T	V	M	G	R	N	A	P	P	P	V	Q	R	Y	L	L	Q	R	H	Q	Q	A	G	V	R	I	L	L	N	N	A	I	E	H	V	V	D	G	E	K	V	E	L	T	L	Q	S	G	E	T	L	Q	A	D	V	V	I	Y	G	I
Query Conservation
Alig confidence																										.
Template Conservation																										.
Template Sequence		E	M	A	E	A	F	A	A	Q	G	K	N	V	T	M	I	V	R	G	E	R	V	L	R	.	R	S	F	D	K	E	V	T	D	I	L	E	E	K	L	K	K	H	V	N	L	R	L	Q	E	I	T	M	K	I	E	G	E	E	R	V	E	K	V	V	T	D	A	G	E	Y	K	A	E	L	V	I	L	A	T
Template Known Secondary structure									T	T	T								S	S	S	S	T	T	T	.	T	T	S													T	T	T	S					S								B	S	S	S	B						T	T						S						S
Template Predicted Secondary structure																										.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		238	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure															.	.																																						.
Query SS confidence															.	.																																						.
Query Sequence		G	I	S	A	N	E	Q	L	A	R	E	A	N	.	.	L	D	T	A	N	G	I	V	I	D	E	A	C	R	T	C	D	P	A	I	F	A	G	G	D	V	A	I	T	R	L	D	N	G	A	L	H	.	R	C	E	S	W	E	N	A	N	N	Q	A	Q	I	A	A	A	A	M	L	G	L	P	L	P	L	L
Query Conservation															.	.																																						.
Alig confidence															.	.																																						.
Template Conservation
Template Sequence		G	I	K	P	N	I	E	L	A	K	Q	L	G	V	R	I	G	E	T	G	A	I	W	T	N	E	K	M	Q	T	S	V	E	N	V	Y	A	A	G	D	V	A	E	T	R	H	V	I	T	G	R	R	V	W	V	P	L	A	P	A	G	N	K	M	G	Y	V	A	G	S	N	I	A	G	K	E	L	H	F	P
Template Known Secondary structure												T	T	T			B		T	T	S	S	B				T	T		B		S	S	T	T					G	G	G	B				B	T	T	T		S																						T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
			315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.																			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.
Predicted Secondary structure		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Query SS confidence		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Query Sequence		.	P	P	P	W	F	W	S	D	Q	Y	S	D	N	L	Q	F	I	G	D	M	R	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	L	C	R	G	N	P	E	T	Q	K	A	I	W	F	N	L	Q	N	G	V	L	I	G	A	V	T	L	N	.	.	Q	G	R	E	I	R
Query Conservation		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Alig confidence		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation
Template Sequence		G	V	L	G	T	A	V	T	K	F	M	D	V	E	I	G	K	T	G	L	T	E	M	E	A	L	K	E	G	Y	D	V	R	T	A	F	I	K	A	S	T	R	P	H	Y	Y	P	G	G	R	E	I	W	L	K	G	V	V	D	N	E	T	N	R	L	L	G	V	Q	V	V	G	S	D	I	L	P	R	I	D
Template Known Secondary structure			B									T	T																T	T												S	S		S	S	S	T	T												T	T	T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	R	K	W	I	Q	S	G	K	T	F	D	A	K	L	L	I	D	E	N	I	A	L
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		T	A	A	A	M	L	M	A	G	F	T	T	K	.	.	D	A	F	F	T	D	L	A	Y
Template Known Secondary structure										T		B			.	.				T	S
Template Predicted Secondary structure															.	.
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.			.	.	.	.	.	.	420	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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