Job Description P77650 Confidence 100.00% Date Thu Jan 5 12:31:22 GMT 2012 Rank 15 Aligned Residues 357 % Identity 22% Template c3iwaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: crystal structure of a fad-dependent pyridine nucleotide-disulphide2 oxidoreductase from desulfovibrio vulgaris Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	I	I	I	V	G	G	G	Q	A	A	A	M	A	A	A	S	L	R	Q	Q	G	F	T	G	E	L	H	L	F	S	D	E	R	H	L	P	Y	E	R	P	P	L	S	K	S	M	L	L	E	D	S	P	Q	L	Q	Q	V	L	P	A	N	W	W	Q	E	N	N	V	H	L	H	S	G	V	T	I	K	T
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	H	V	V	V	I	G	A	V	A	L	G	P	K	A	A	C	R	F	K	R	L	D	P	E	A	H	V	T	M	I	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	E	A	L	V	E	T	R	A	H	A
Template Known Secondary structure										S	S														T	T	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																																				.	.	.	.	40	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.						.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																																																			.	.
Query SS confidence												.	.	.	.	.																																																			.	.
Query Sequence		L	G	R	D	T	R	E	L	V	L	.	.	.	.	.	T	N	G	E	S	W	H	W	D	Q	L	F	I	A	T	G	A	A	A	R	P	L	P	L	L	D	A	L	G	E	R	C	F	T	L	R	H	A	G	D	A	A	R	L	R	E	V	L	Q	P	.	.	E	R	S	V	V	I	I	G	A	G	T	I	G
Query Conservation												.	.	.	.	.																																																			.	.
Alig confidence												.	.	.	.	.																																																			.	.
Template Conservation
Template Sequence		I	D	R	A	A	H	T	V	E	I	E	N	L	R	T	G	E	R	R	T	L	K	Y	D	K	L	V	L	A	L	G	S	K	A	N	R	P	P	V	E	G	M	D	L	A	G	V	T	P	V	T	N	L	D	E	A	E	F	V	Q	H	A	I	S	A	G	E	V	S	K	A	V	I	V	G	G	G	F	I	G
Template Known Secondary structure				T	T	T	T							T	T	T									S														S		T	T	T	T	S	B	T						S													T	T	S		S								S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		157	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure													.																																															.
Query SS confidence													.																																															.
Query Sequence		L	E	L	A	A	S	A	T	Q	R	R	.	C	K	V	T	V	I	E	L	A	A	T	V	M	G	R	N	A	P	P	P	V	Q	R	Y	L	L	Q	R	H	Q	Q	A	G	V	R	I	L	L	N	N	A	I	E	H	V	V	.	D	G	E	K	V	E	L	T	L	Q	S	G	E	T	L	Q	A	D	V	V	I
Query Conservation													.																																															.
Alig confidence													.																																															.
Template Conservation
Template Sequence		L	E	M	A	V	S	L	A	D	M	W	G	I	D	T	T	V	V	E	L	A	D	Q	I	M	P	G	F	T	S	K	S	L	S	Q	M	L	R	H	D	L	E	K	N	D	V	V	V	H	T	G	E	K	V	V	R	L	E	G	E	N	G	K	V	A	R	V	I	T	D	K	R	T	L	D	A	D	L	V	I
Template Known Secondary structure																					S	S	S	S	S	S	T	T	T	S															T	T						S									S	S	S	B							S	S						S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		235	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure															.	.																																									.
Query SS confidence															.	.																																									.
Query Sequence		Y	G	I	G	I	S	A	N	E	Q	L	A	R	.	.	E	A	N	L	D	T	A	N	G	I	V	I	D	E	A	C	R	T	C	D	P	A	I	F	A	G	G	D	V	A	I	T	R	L	D	N	G	A	L	H	.	R	C	E	S	W	E	N	A	N	N	Q	A	Q	I	A	A	A	A	M	L	G	L	P	L
Query Conservation															.	.																																									.
Alig confidence															.	.																																									.
Template Conservation
Template Sequence		L	A	A	G	V	S	P	N	T	Q	L	A	R	D	A	G	L	E	L	D	P	R	G	A	I	I	V	D	T	R	M	R	T	S	D	P	D	I	F	A	G	G	D	C	V	T	I	P	N	L	V	T	G	K	P	G	F	F	P	L	G	S	M	A	N	R	Q	G	R	V	I	G	T	N	L	A	D	G	D	A
Template Known Secondary structure				S													T			B		T	T							T	T		B		S	S	T	T					G	G	G					B	T	T	T	S	S							T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		312	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.								.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.					.	.	.	.	.	.	.
Predicted Secondary structure					.																							.	.	.	.	.	.	.																																.					.	.	.	.
Query SS confidence					.																							.	.	.	.	.	.	.																																.					.	.	.	.
Query Sequence		P	L	L	.	P	P	P	W	F	W	S	D	Q	Y	S	D	N	L	Q	F	I	G	D	M	R	G	.	.	.	.	.	.	.	D	D	W	L	C	R	G	N	P	E	T	Q	K	A	I	W	F	N	L	Q	N	G	V	L	I	G	A	V	T	L	N	.	Q	G	R	E	.	.	.	.	I	R	P	I	R	K	W
Query Conservation					.																							.	.	.	.	.	.	.																																.					.	.	.	.
Alig confidence					.																							.	.	.	.	.	.	.																																.					.	.	.	.
Template Conservation
Template Sequence		T	F	P	G	A	V	G	S	W	A	V	K	L	F	E	G	S	A	S	G	A	G	L	T	V	E	G	A	L	R	E	G	Y	D	A	V	N	V	H	V	E	Q	I	M	T	L	Q	L	V	V	D	R	P	T	R	R	V	L	G	I	Q	G	F	S	T	L	G	D	A	L	T	A	R	I	N	A	V	A	T	M
Template Known Secondary structure						B									S	S																T	T																				T	T	T		B									S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	S	G	K	T	F	D	A	K	L	L	I	D	E	N	I	A	L
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		L	A	S	K	P	T	V	E	.	.	D	I	S	N	A	E	V	V	M
Template Known Secondary structure			T	T			B			.	.				T
Template Predicted Secondary structure										.	.
Template SS confidence
		422	.	.	.	.	.	.	.			430	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions