Job Description P77650 Confidence 99.24% Date Thu Jan 5 12:31:22 GMT 2012 Rank 197 Aligned Residues 247 % Identity 11% Template c2yg4B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:putrescine oxidase; PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine Resolution 2.30 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.																										.	.
Query SS confidence																																																			.	.	.	.																										.	.
Query Sequence		E	K	T	I	I	I	V	G	G	G	Q	A	A	A	M	A	A	A	S	L	R	Q	Q	G	F	T	G	E	L	H	L	F	S	D	E	R	H	L	P	Y	E	R	P	P	L	S	K	S	M	.	.	.	.	L	L	E	D	S	P	Q	L	Q	Q	V	L	P	A	N	W	W	Q	E	N	N	V	H	L	H	.	.
Query Conservation																																																			.	.	.	.																										.	.
Alig confidence																											.	.																							.	.	.	.																										.	.
Template Conservation																											.	.
Template Sequence		Q	R	D	V	A	I	V	G	A	G	P	S	G	L	A	A	A	T	A	L	R	K	A	G	L	.	.	S	V	A	V	I	E	A	R	D	R	V	G	G	R	T	W	T	D	T	I	D	G	A	V	L	E	I	G	G	Q	W	V	S	P	D	Q	T	A	L	I	S	L	L	D	E	L	G	L	K	T	F	E	R
Template Known Secondary structure											S													T	T		.	.							S	S	S	S	S		T	T							T	T						S				B		T	T											T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
			77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.																				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	S	G	V	T	I	K	T	L	G	R	D	T	R	E	L	V	L	T	N	G	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	H	W	D	Q	L	F	I	A	T	G	A	A	A	R	P	L	P	L	L	D	A	L	G	E	R	C	F	T	L	R	H	A	G	D	A	A	R
Query Conservation		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	R	E	G	E	S	V	Y	I	S	S	A	G	E	R	T	R	Y	T	G	D	S	F	P	T	N	E	T	T	K	K	E	M	D	R	L	I	D	E	M	D	D	L	A	A	Q	I	G	A	E	E	P	W	A	H	P	L	A	R	D	L	D	T	V	S	F	K	Q	W	L	I	N	Q	S	D	D	A	E	A	R
Template Known Secondary structure					S							T	T								S	S	S																											S	S		G	G	G	S	T	T						T	S	B										S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		L	R	E	V	L	Q	P	E	R	S	V	V	I	I	G	A	G	T	I	G	L	E	L	A	A	S	A	T	Q	R	R	C	K	V	T	V	I	E	L	A	A	T	V	M	G	R	N	A	P	P	P	V	Q	R	Y	L	L	Q	R	H	Q	Q	A	G	V	R	I	L	L	N	N	A	I	E	H	V	V	.	D	G
Query Conservation																																																																															.
Alig confidence																																																																															.
Template Conservation
Template Sequence		D	N	I	G	L	F	I	A	G	G	M	L	T	K	P	A	H	S	F	S	A	L	Q	A	V	L	M	A	A	S	A	G	S	F	S	H	L	V	D	E	D	F	I	L	D	K	R	V	I	G	G	M	Q	Q	V	S	I	R	M	A	E	A	L	G	D	D	V	F	L	N	A	P	V	R	T	V	K	W	N	E
Template Known Secondary structure															S		T	T	S	S	B											T	T												T					T	T		T												G	G	G				S										T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	V	E	L	T	L	Q	S	G	E	T	L	Q	A	D	V	V	I	Y	G	I	G	I	S	A	N	E	Q	L	A	R	E	A	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	A	T	V	L	A	D	G	D	I	R	V	E	A	S	R	V	I	L	A	V	P	P	N	L	Y	S	R	I	S	Y	D	P	P	L
Template Known Secondary structure		T							T	T	T												S		G	G	G	G	G	G	S				S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions