Job Description P77650 Confidence 100.00% Date Thu Jan 5 12:31:22 GMT 2012 Rank 26 Aligned Residues 382 % Identity 16% Template c2qaeA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure analysis of trypanosoma cruzi lipoamide2 dehydrogenase Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	E	K	T	I	I	I	V	G	G	G	Q	A	A	A	M	A	A	A	S	L	R	Q	Q	G	F	T	G	E	L	H	L	F	S	D	E	R	H	L	P	Y	E	R	P	P	L	S	K	S	M	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.
Template Sequence		N	P	Y	D	V	V	V	I	G	G	G	P	G	G	Y	V	A	S	I	K	A	A	Q	L	G	M	.	.	K	T	A	C	V	E	K	R	G	A	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	H	A	T	H	L	Y	H	D	A	H	A	N	F	A	R	Y	G	L	M	G	G	E	G	V	T
Template Known Secondary structure												S													T	T		.	.							S	S	S	S	S	S							S																				T					T				G	G	G
Template Predicted Secondary structure																												.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
												54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																														.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																														.
Query Sequence		.	.	.	.	.	.	.	.	.	.	E	D	S	P	Q	L	Q	Q	V	L	P	A	N	W	W	Q	E	N	N	V	H	L	H	S	G	V	T	I	K	T	L	G	R	D	T	R	E	L	V	L	T	N	G	E	S	.	W	H	W	D	Q	L	F	I	A	T	G	A	A	A	R	P	L	P	L	L	D	A	L	G
Query Conservation		.	.	.	.	.	.	.	.	.	.																																														.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																														.
Template Conservation
Template Sequence		M	D	S	A	K	M	Q	Q	Q	K	E	R	A	V	K	G	L	T	G	G	V	E	Y	L	F	K	K	N	K	V	T	Y	Y	K	G	E	G	S	F	E	T	A	H	S	I	R	V	N	G	L	D	G	K	Q	E	M	L	E	T	K	K	T	I	I	A	T	G	S	E	P	T	E	L	P	F	L	P	F	D	E
Template Known Secondary structure																														T													T	T							T	T	S																					B	T	T	B				S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	C	F	T	L	R	H	A	G	D	A	A	R	L	R	E	V	L	Q	P	E	R	S	V	V	I	I	G	A	G	T	I	G	L	E	L	A	A	S	A	T	Q	R	R	C	K	V	T	V	I	E	L	A	A	T	V	M	G	R	N	A	P	P	P	V	Q	R	Y	L	L	Q	R	H	Q	Q	A	G	V	R
Query Conservation
Alig confidence						.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.
Template Sequence		K	V	V	L	.	.	.	.	.	.	S	S	T	G	A	L	A	L	P	R	V	P	K	T	M	V	V	I	G	G	G	V	I	G	L	E	L	G	S	V	W	A	R	L	G	A	E	V	T	V	V	E	F	A	P	R	C	A	P	T	L	D	E	D	V	T	N	A	L	V	G	A	L	A	K	N	E	K	M	K
Template Known Secondary structure		S	S			.	.	.	.	.	.							T		S	S			S								S													T	T								S	S	S	S	S	S	T	T	S																T
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		159	160	.	.							.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																.	.																																.	.	.	.
Query SS confidence																.	.																																.	.	.	.
Query Sequence		I	L	L	N	N	A	I	E	H	V	V	D	G	E	.	.	K	V	E	L	T	L	Q	S	G	E	T	L	Q	A	D	V	V	I	Y	G	I	G	I	S	A	N	E	Q	L	A	R	.	.	.	.	E	A	N	L	D	T	A	N	G	I	V	I	D	E	A	C	R	T	C	D	P	A	I	F	A	G	G	D	V
Query Conservation																.	.																																.	.	.	.
Alig confidence																.	.																																.	.	.	.
Template Conservation
Template Sequence		F	M	T	S	T	K	V	V	G	G	T	N	N	G	D	S	V	S	L	E	V	E	G	K	R	E	T	V	T	C	E	A	L	L	V	S	V	G	R	R	P	F	T	G	G	L	G	L	D	K	I	N	V	A	K	N	E	R	G	F	V	K	I	G	D	H	F	E	T	S	I	P	D	V	Y	A	I	G	D	V
Template Known Secondary structure					S										S	S	S															S						S							T	T	S						T			B		T	T	S		B				T	T	S	B		S	S	T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	T	R	L	D	N	G	A	L	H	R	C	E	S	W	E	N	A	N	N	Q	A	Q	I	A	A	A	A	M	L	G	L	P	L	P	L	L	P	P	P	W	F	W	S	D	Q	Y	S	D	N	L	Q	F	I	G	D	M	R	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.
Template Sequence		V	D	K	G	.	.	.	.	.	.	.	.	P	M	L	A	H	K	A	E	D	E	G	V	A	C	A	E	I	L	A	G	K	P	G	H	V	N	Y	G	V	I	P	A	V	I	Y	T	M	P	E	V	A	S	V	G	K	S	E	D	E	L	K	K	E	G	V	A	Y	K	V	G	K	F	P	F	N	A	N	S
Template Known Secondary structure		B	S	S	S	.	.	.	.	.	.	.	.		S																	T	T							T	T	S							S	S	S															T	T										G	G	G
Template Predicted Secondary structure						.	.	.	.	.	.	.	.
Template SS confidence
		316	.	.	.									320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.																			.
Query SS confidence																																.	.																			.
Query Sequence		D	W	L	C	R	G	N	P	E	T	Q	K	A	I	W	F	N	L	Q	N	G	V	L	I	G	A	V	T	L	N	.	.	Q	G	R	E	I	R	P	I	R	K	W	I	Q	S	G	K	T	F	.	D	A	K	L	L	I	D	E	N	I	A	L	K	S
Query Conservation																																.	.																			.
Alig confidence																																.	.																			.
Template Conservation
Template Sequence		R	A	K	A	V	S	T	E	D	G	F	V	K	V	L	V	D	K	A	T	D	R	I	L	G	V	H	I	V	C	T	T	A	G	E	L	I	G	E	A	C	L	A	M	E	Y	G	A	S	S	E	D	V	G	R	T	C	H	A	H	P	T	M	S	E
Template Known Secondary structure						T	T												T	T	T		B									T	T														T	T		B						T	S				S	S		T
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.