Job Description P77650 Confidence 99.26% Date Thu Jan 5 12:31:22 GMT 2012 Rank 192 Aligned Residues 241 % Identity 13% Template c2ivdA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of protoporphyrinogen oxidase from myxococcus2 xanthus with acifluorfen Resolution 2.3 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.																								.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.																								.	.	.	.	.	.
Query Sequence		T	I	I	I	V	G	G	G	Q	A	A	A	M	A	A	A	S	L	R	Q	Q	G	F	T	G	E	L	H	L	F	S	D	E	R	H	L	P	Y	E	R	P	P	L	S	K	S	M	.	.	.	.	L	L	E	D	S	P	Q	L	Q	Q	V	L	P	A	N	W	W	Q	E	N	N	V	H	.	.	.	.	.	.
Query Conservation																																																	.	.	.	.																								.	.	.	.	.	.
Alig confidence																									.	.																							.	.	.	.																								.	.	.	.	.	.
Template Conservation																									.	.
Template Sequence		N	V	A	V	V	G	G	G	I	S	G	L	A	V	A	H	H	L	R	S	R	G	T	.	.	D	A	V	L	L	E	S	S	A	R	L	G	G	A	V	G	T	H	A	L	A	G	Y	L	V	E	Q	G	P	N	S	F	L	D	R	E	P	A	T	R	A	L	A	A	A	L	N	L	E	G	R	I	R	A	A
Template Known Secondary structure									B												T	T	T		.	.							S	S	S	S	S	B	T	T							T	T					S	S						T	T											T	T		G	G	G				S
Template Predicted Secondary structure																									.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
										75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																																.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	L	H	S	G	V	T	I	K	T	L	G	R	D	T	R	E	L	V	L	T	N	G	E	S	W	H	W	D	Q	L	F	I	A	T	G	A	A	A	R	P	L	P	L	L	D	A	L	G	E	R	C	F	T	L	R	H	A	G	D	A	A	R	L	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.																																																																.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																																																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	A	A	K	R	R	Y	V	Y	T	R	G	R	L	R	S	V	P	A	S	P	P	A	F	L	A	S	D	I	L	P	L	G	A	R	L	R	V	A	G	E	L	F	S	R	R	A	P	E	G	V	D	E	S	L	A	A	F	G	R	R	H	L	G	H	R	A	T	Q	V	L	L	D	A	V	Q	T	G	I
Template Known Secondary structure			S	S									T	T								S						T		S	S	S										G	G	G	G						T	T				B									T								T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
												138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	R	E	V	L	Q	P	E	R	S	V	V	I	I	G	A	G	T	I	G	L	E	L	A	A	S	A	T	Q	R	R	C	K	V	T	V	I	E	L	A	A	T	V	M	G	R	N	A	P	P	P	V	Q	R	Y	L	L	Q	R	H	Q	Q	A	G	V	R	I	L	L	N	N
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		Y	A	G	D	V	E	Q	L	S	V	A	A	T	F	P	M	L	V	K	M	E	R	E	H	R	S	L	I	L	G	A	I	R	A	Q	K	A	Q	R	Q	A	G	T	A	P	K	L	S	G	A	L	S	T	F	D	G	G	L	Q	V	L	I	D	A	L	A	A	S	L	.	.	.	G	D	A	A	H	V	G	A
Template Known Secondary structure						T	T	T	B	B																S	S													T					S											T	T		T												.	.	.	G	G	G			S	S
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.
		208	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		A	I	E	H	V	V	.	.	D	G	E	K	V	E	L	T	L	Q	S	G	E	T	L	Q	A	D	V	V	I	Y	G	I	G	I	S	A	N	E	Q	L	A	R	E	A	N
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		R	V	E	G	L	A	R	E	G	W	R	L	I	I	E	E	H	G	R	R	A	E	L	S	V	A	Q	V	V	L	A	A	P	A	H	A	T	A	K	L	L	R	P	L	D
Template Known Secondary structure																		T	T								S						S										T	T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions