Job Description P77650 Confidence 100.00% Date Thu Jan 5 12:31:22 GMT 2012 Rank 23 Aligned Residues 376 % Identity 21% Template c2eq7B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo Resolution 1.80 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	T	I	I	I	V	G	G	G	Q	A	A	A	M	A	A	A	S	L	R	Q	Q	G	F	T	G	E	L	H	L	F	S	D	E	R	H	L	P	Y	E	R	P	P	L	S	K	S	M	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		Y	D	L	L	V	I	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	G	M	.	.	K	V	G	V	V	E	K	E	K	A	L	G	G	T	C	L	R	V	G	C	I	P	S	K	A	L	L	E	T	T	E	R	I	Y	E	A	K	K	G	L	L	G	A	K	V	K	G	V	E	L	D	L	P	A
Template Known Secondary structure										S													T	T		.	.							S	S	S	S	S	S							S																						T	T				S
Template Predicted Secondary structure																										.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
							54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	E	D	S	P	Q	L	Q	Q	V	L	P	A	N	W	W	Q	E	N	N	V	H	L	H	S	G	V	T	I	K	T	L	G	R	D	T	R	E	L	V	L	T	N	G	E	S	W	H	W	D	Q	L	F	I	A	T	G	A	A	A	R	P	L	P	L	L	D	A	L	G	E	R	C	F	T	L
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																										.	.																																																.
Template Conservation																																.	.																																																.
Template Sequence		L	M	A	H	K	D	K	V	V	Q	A	N	T	Q	G	V	E	F	L	F	K	K	N	G	I	A	R	H	Q	G	.	.	T	A	R	F	L	S	E	R	K	V	L	V	E	E	T	G	E	E	L	E	A	R	Y	I	L	I	A	T	G	S	A	P	L	I	P	P	W	A	Q	V	D	Y	E	R	V	V	T	.
Template Known Secondary structure																								T	T						S	.	.					S	S	S	S					T	T	T	T																				T	T	B				S	S	S				.
Template Predicted Secondary structure																																.	.																																																.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	A	G	D	A	A	R	L	R	E	V	L	Q	P	E	R	S	V	V	I	I	G	A	G	T	I	G	L	E	L	A	A	S	A	T	Q	R	R	C	K	V	T	V	I	E	L	A	A	T	V	M	G	R	N	A	P	P	P	V	Q	R	Y	L	L	Q	R	H	Q	Q	A	G	V	R	I	L	L	N	N	A
Query Conservation
Alig confidence		.	.	.	.	.																																																	.
Template Conservation		.	.	.	.	.																																																	.
Template Sequence		.	.	.	.	.	S	T	E	A	L	S	F	P	E	V	P	K	R	L	I	V	V	G	G	G	V	I	G	L	E	L	G	V	V	W	H	R	L	G	A	E	V	I	V	L	E	Y	M	D	R	I	L	P	.	T	M	D	L	E	V	S	R	A	A	E	R	V	F	K	K	Q	G	L	T	I	R	T	G	V	R
Template Known Secondary structure		.	.	.	.	.					T	S		S	S			S								S													T	T								S	S	S	S	S		T	.	T	S																T						S
Template Predicted Secondary structure		.	.	.	.	.																																																	.
Template SS confidence
							157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		209	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.					.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure							.																																									.	.	.	.
Query SS confidence							.																																									.	.	.	.
Query Sequence		I	E	H	V	V	.	D	G	E	K	V	E	L	T	L	Q	S	G	E	T	L	Q	A	D	V	V	I	Y	G	I	G	I	S	A	N	E	Q	L	A	R	E	A	N	L	D	T	.	.	.	.	A	N	G	I	V	I	D	E	A	C	R	T	C	D	P	A	I	F	A	G	G	D	V	A	I	T	R	L	D	N
Query Conservation							.																																									.	.	.	.
Alig confidence							.																																									.	.	.	.																												.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		V	T	A	V	V	P	E	A	K	G	A	R	V	E	L	E	G	G	E	V	L	E	A	D	R	V	L	V	A	V	G	R	R	P	Y	T	E	G	L	S	L	E	N	A	G	L	S	T	D	E	R	G	R	I	P	V	D	E	H	L	R	T	R	V	P	H	I	Y	A	I	G	D	V	V	R	G	P	.	.	.
Template Known Secondary structure									T	T							T	T	S						S						S							T	T			G	G	G	G	T					T	T	S						T	T	S	B		S	S	T	T					G	G	G	S	S	S		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.																				.	.	340	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	L	H	R	C	E	S	W	E	N	A	N	N	Q	A	Q	I	A	A	A	A	M	L	G	L	P	L	P	L	L	P	P	P	W	F	W	S	D	Q	Y	S	D	N	L	Q	F	I	G	D	M	R	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	L	C	R	G	N
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	M	L	A	H	K	A	S	E	E	G	I	A	A	V	E	H	M	V	R	G	F	G	H	V	D	Y	Q	A	I	P	S	V	V	Y	T	H	P	E	I	A	A	V	G	Y	T	E	E	E	L	K	A	Q	G	I	P	Y	K	V	G	K	F	P	Y	S	A	S	G	R	A	R	A	M	G	E
Template Known Secondary structure		.	.	.	.	.	.																				S						G	G	G							S	S	S															T	T										G	G	G								T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																			.
Query SS confidence																									.	.																			.
Query Sequence		P	E	T	Q	K	A	I	W	F	N	L	Q	N	G	V	L	I	G	A	V	T	L	N	.	.	Q	G	R	E	I	R	P	I	R	K	W	I	Q	S	G	K	T	F	.	D	A	K	L	L	I	D	E	N	I	A	L	K	S
Query Conservation																									.	.																			.
Alig confidence																									.	.																			.
Template Conservation
Template Sequence		T	E	G	F	I	K	V	L	A	H	A	K	T	D	R	I	L	G	V	H	G	I	G	A	R	V	G	D	V	L	A	E	A	A	L	A	L	F	F	K	A	S	A	E	D	L	G	R	A	P	H	A	H	P	S	L	S	E
Template Known Secondary structure												T	T	T		B									T	T														T	T		B							S				T	T		T
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.