Job Description P77650 Confidence 100.00% Date Thu Jan 5 12:31:22 GMT 2012 Rank 51 Aligned Residues 379 % Identity 17% Template c2cfyB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of human thioredoxin reductase 1 Resolution 2.7 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	T	I	I	I	V	G	G	G	Q	A	A	A	M	A	A	A	S	L	R	Q	Q	G	F	T	G	E	L	H	L	F	S	D	E	R	H	L	P	Y	E	R	P	P	L	S	K	S	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.
Template Sequence		D	Y	D	L	I	I	I	G	G	G	S	G	G	L	A	A	A	K	E	A	A	Q	Y	G	K	.	.	K	V	M	V	L	D	F	V	T	P	T	P	L	G	T	R	W	G	L	G	G	T	C	V	N	V	G	C	I	P	K	K	L	M	H	Q	A	A	L	L	G	Q	A	L	Q	D	S	R	N	Y	G	W	K
Template Known Secondary structure		S									S												T	T	T		.	.												T	T						T	T							S																							T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
																	53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	D	S	P	Q	L	Q	Q	V	L	P	A	N	W	W	Q	E	N	N	V	H	L	H	S	G	V	T	I	K	T	L	G	R	D	T	R	E	L	V	L	T	.	N	G	E	S	W	H	W	D	Q	L	F	I	A	T	G	A	A	A	R	P	L	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation
Template Sequence		V	E	E	T	V	K	H	D	W	D	R	M	I	E	A	V	Q	N	H	I	G	S	L	N	W	G	Y	R	V	A	L	R	E	K	K	V	V	Y	E	N	A	Y	G	Q	F	I	G	P	H	R	I	K	A	T	N	N	K	G	K	E	K	I	Y	S	A	E	R	F	L	I	A	T	G	E	R	P	R	Y	L	G
Template Known Secondary structure				S	S																														T	T													T	T							T	T	S																						S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	A	L	G	E	R	C	F	T	L	R	H	A	G	D	A	A	R	L	R	E	V	L	Q	P	E	R	S	V	V	I	I	G	A	G	T	I	G	L	E	L	A	A	S	A	T	Q	R	R	C	K	V	T	V	I	E	L	A	A	T	V	M	G	R	N	A	P	P	P	V	Q	R	Y	L	L	Q	R	H
Query Conservation
Alig confidence				.	.	.	.	.	.	.																																																							.	.
Template Conservation				.	.	.	.	.	.	.																																																							.	.
Template Sequence		I	P	.	.	.	.	.	.	.	G	D	K	E	Y	C	I	S	S	D	D	L	F	S	L	P	Y	C	P	G	K	T	L	V	V	G	A	S	Y	V	A	L	E	C	A	G	F	L	A	G	I	G	L	D	V	T	V	M	V	R	S	I	L	L	.	.	R	G	F	D	Q	D	M	A	N	K	I	G	E	H	M
Template Known Secondary structure		S	T	.	.	.	.	.	.	.	T						B						T	T		S	S				S							S													T	T								S	S		S	S	.	.	T	T	S
Template Predicted Secondary structure				.	.	.	.	.	.	.																																																							.	.
Template SS confidence
		170	.								.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.											.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.						.	.	.	.	.	.	260	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Query Sequence		Q	Q	A	G	V	R	I	L	L	N	N	A	I	E	H	V	V	D	G	E	.	.	.	.	.	.	.	.	.	.	K	V	E	L	T	L	Q	S	G	E	T	L	Q	A	D	V	V	I	Y	G	I	G	I	S	A	N	E	Q	L	A	R	E	A	N	L	D	T	.	.	.	.	.	A	N	G	I	V	I	D	E
Query Conservation																						.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation
Template Sequence		E	E	H	G	I	K	F	I	R	Q	F	V	P	I	K	V	E	Q	I	E	A	G	T	P	G	R	L	R	V	V	A	Q	S	T	N	S	E	E	I	I	E	G	E	Y	N	T	V	M	L	A	I	G	R	D	A	C	T	R	K	I	G	L	E	T	V	G	V	K	I	N	E	K	T	G	K	I	P	V	T	D
Template Known Secondary structure				T	T						S												S	T	T										S	S	S	S								S						S					S		S	S	S		G	G	G	T	T					T	T	T			B				T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.																														.	.	.
Query SS confidence																																																	.																														.	.	.
Query Sequence		A	C	R	T	C	D	P	A	I	F	A	G	G	D	V	A	I	T	R	L	D	N	G	A	L	H	R	C	E	S	W	E	N	A	N	N	Q	A	Q	I	A	A	A	A	M	L	G	.	L	P	L	P	L	L	P	P	P	W	F	W	S	D	Q	Y	S	D	N	L	Q	F	I	G	D	M	R	G	D	.	.	.
Query Conservation																																																	.																														.	.	.
Alig confidence																					.	.	.	.	.	.	.	.																					.																														.	.	.
Template Conservation																					.	.	.	.	.	.	.	.
Template Sequence		E	E	Q	T	N	V	P	Y	I	Y	A	I	G	D	I	L	E	D	K	.	.	.	.	.	.	.	.	V	E	L	T	P	V	A	I	Q	A	G	R	L	L	A	Q	R	L	Y	A	G	S	T	V	K	C	D	Y	E	N	V	P	T	T	V	F	T	P	L	E	Y	G	A	C	G	L	S	E	E	K	A	V	E
Template Known Secondary structure		T	S	B		S	S	T	T					S	T	T	B	T	T	S	.	.	.	.	.	.	.	.																				S									S	S							S	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.									340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
																					338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.												.	.																			.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.												.	.																			.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	L	C	R	G	N	P	E	T	Q	K	A	I	W	F	N	L	Q	.	N	G	V	L	I	G	A	V	T	L	N	.	.	Q	G	R	E	I	R	P	I	R	K	W	I	Q	S	G	K	T	F	.	D	A	K	L	L	I	D	E	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.												.	.																			.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.												.	.																			.
Template Conservation
Template Sequence		K	F	G	E	E	N	I	E	V	Y	H	S	Y	F	W	P	L	E	W	T	I	P	S	R	D	N	N	K	C	Y	A	K	I	I	C	N	T	K	D	N	E	R	V	V	G	F	H	V	L	G	P	N	A	G	E	V	T	Q	G	F	A	A	A	L	K	C	G	L	T	K	K	Q	L	D	S	T	I	G	I	H
Template Known Secondary structure					G	G	G											G	G	G	T	T	T	T			T	T										G	G	G	T	T									S	T	T														T	T		B							S				T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		395	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	L	K	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	C	A	E	V
Template Known Secondary structure		T		G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		473	.	.	.	.	.