Job Description P77650 Confidence 100.00% Date Thu Jan 5 12:31:22 GMT 2012 Rank 47 Aligned Residues 380 % Identity 16% Template c1zkqA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial; PDBTitle: crystal structure of mouse thioredoxin reductase type 2 Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	E	K	T	I	I	I	V	G	G	G	Q	A	A	A	M	A	A	A	S	L	R	Q	Q	G	F	T	G	E	L	H	L	F	S	D	E	R	H	L	P	Y	E	R	P	P	L	S	K	S	M	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.
Template Sequence		Q	S	F	D	L	L	V	I	G	G	G	S	G	G	L	A	C	A	K	E	A	A	Q	L	G	K	.	.	K	V	A	V	A	D	Y	V	E	P	S	P	R	G	T	K	W	G	L	G	G	T	C	V	N	V	G	C	I	P	K	K	L	M	H	Q	A	A	L	L	G	G	M	I	R	D	A	H	H	Y	G	W
Template Known Secondary structure												S													T	T		.	.												T	T						S	S							S																							T	T
Template Predicted Secondary structure																												.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
																			54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	S	P	Q	L	Q	Q	V	L	P	A	N	W	W	Q	E	N	N	V	H	L	H	S	G	V	T	I	K	T	L	G	R	D	T	R	E	L	V	L	T	N	G	.	E	S	W	H	W	D	Q	L	F	I	A	T	G	A	A	A	R	P	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation
Template Sequence		E	V	A	Q	P	V	Q	H	N	W	K	T	M	A	E	A	V	Q	N	H	V	K	S	L	N	W	G	H	R	V	Q	L	Q	D	R	K	V	K	Y	F	N	I	K	A	S	F	V	D	E	H	T	V	R	G	V	D	K	G	G	K	A	T	L	L	S	A	E	H	I	V	I	A	T	G	G	R	P	R	Y	P
Template Known Secondary structure					S																															T	T							B			B	S	S	S	S					B		T	T
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	L	D	A	L	G	E	R	C	F	T	L	R	H	A	G	D	A	A	R	L	R	E	V	L	Q	P	E	R	S	V	V	I	I	G	A	G	T	I	G	L	E	L	A	A	S	A	T	Q	R	R	C	K	V	T	V	I	E	L	A	A	T	V	M	G	R	N	A	P	P	P	V	Q	R	Y	L	L	Q	R
Query Conservation
Alig confidence													.	.	.	.	.	.																																																.	.
Template Conservation													.	.	.	.	.	.																																																.	.
Template Sequence		T	Q	V	K	G	A	L	E	Y	G	I	.	.	.	.	.	.	T	S	D	D	I	F	W	L	K	E	S	P	G	K	T	L	V	V	G	A	S	Y	V	A	L	E	C	A	G	F	L	T	G	I	G	L	D	T	T	V	M	M	R	S	I	P	L	.	.	R	G	F	D	Q	Q	M	S	S	L	V	T	E	H
Template Known Secondary structure		T	T		B	T						B	.	.	.	.	.	.						T	T		S	S				S							S													T	T								S	S		S	S	.	.	T	T	S
Template Predicted Secondary structure													.	.	.	.	.	.																																																.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.							.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.								.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.						.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.																															.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.																															.	.	.	.	.
Query Sequence		H	Q	Q	A	G	V	R	I	L	L	N	N	A	I	E	H	V	V	D	G	E	K	V	E	L	T	L	Q	.	.	.	.	.	.	.	S	G	E	T	L	Q	A	D	V	V	I	Y	G	I	G	I	S	A	N	E	Q	L	A	R	E	A	N	L	D	T	.	.	.	.	.	A	N	G	I	V	I	D	E	A	C
Query Conservation																														.	.	.	.	.	.	.																															.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.																															.	.	.	.	.
Template Conservation
Template Sequence		M	E	S	H	G	T	Q	F	L	K	G	C	V	P	S	H	I	K	K	L	P	T	N	Q	L	Q	V	T	W	E	D	H	A	S	G	K	E	D	T	G	T	F	D	T	V	L	W	A	I	G	R	V	P	E	T	R	T	L	N	L	E	K	A	G	I	S	T	N	P	K	N	Q	K	I	I	V	D	A	Q	E
Template Known Secondary structure				T	T	T						T										T	T	S									T	T	S	S	S							S						S					S		G	G	G	T	G	G	G	G	T					S	S	S			B				T	T	S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.																											.	.	.	.	.
Query SS confidence																																																		.																											.	.	.	.	.
Query Sequence		R	T	C	D	P	A	I	F	A	G	G	D	V	A	I	T	R	L	D	N	G	A	L	H	R	C	E	S	W	E	N	A	N	N	Q	A	Q	I	A	A	A	A	M	L	G	L	P	L	.	P	L	L	P	P	P	W	F	W	S	D	Q	Y	S	D	N	L	Q	F	I	G	D	M	R	G	D	.	.	.	.	.
Query Conservation																																																		.																											.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.																							.																											.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.
Template Sequence		A	T	S	V	P	H	I	Y	A	I	G	D	V	A	E	G	R	P	.	.	.	.	.	.	.	.	E	L	T	P	T	A	I	K	A	G	K	L	L	A	Q	R	L	F	G	K	S	S	T	L	M	D	Y	S	N	V	P	T	T	V	F	T	P	L	E	Y	G	C	V	G	L	S	E	E	E	A	V	A	L	H
Template Known Secondary structure		B		S	S	T	T					G	G	G	B	S	S	S		.	.	.	.	.	.	.	.																			S									S	S							S	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.									.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
																			338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.											.	.																			.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.											.	.																			.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	L	C	R	G	N	P	E	T	Q	K	A	I	W	F	N	L	Q	N	.	G	V	L	I	G	A	V	T	L	N	.	.	Q	G	R	E	I	R	P	I	R	K	W	I	Q	S	G	K	T	F	.	D	A	K	L	L	I	D	E	N	I	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.											.	.																			.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.											.	.																			.
Template Conservation
Template Sequence		G	Q	E	H	V	E	V	Y	H	A	Y	Y	K	P	L	E	F	T	V	A	D	R	D	A	S	Q	C	Y	I	K	M	V	C	M	R	E	P	P	Q	L	V	L	G	L	H	F	L	G	P	N	A	G	E	V	T	Q	G	F	A	L	G	I	K	C	G	A	S	Y	A	Q	V	M	Q	T	V	G	I	H	P	T
Template Known Secondary structure			G	G	G																	T				T	T									S	S	T	T		B								S	T	T														T	T		B						T	S				S	S
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
		397	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	S	E
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		500	.	.