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Job DescriptionP77650
Confidence100.00%DateThu Jan 5 12:31:22 GMT 2012
Rank36Aligned Residues381
% Identity19%Templatec1v59B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1... .....10.........20.........30.........40.........
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Query Sequence  MKEK. TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  INKSHDVVIIGGGPAGYVAAIKAAQLGF. . NTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGD
Template Known Secondary structure 

STT
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SSSSSSSSSGGGT


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   2.......10.........20......... 30.........40.........50.........60.........70.........
 
   50.........60.........70........ .80.........90.........100.........110....
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Query Sequence  . . . . . . . . SMLLEDSPQLQQVLPANWWQENNVHLHSG. . . . . . . VTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARP
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Template Sequence  IKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTP
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   80.........90.........100.........110.........120.........130.........140.........150.........
 
   115....120.........130.........140.........150.........160.........170.........180.........190....
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Query Sequence  LPLLDALGERCFTLRHAGDAARLREVLQPERSVVIIGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQ
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Template Sequence  FPGIEIDEEKIVS. . . . . . STGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA. SMDGEVAKATQK
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   160.........170.. .......180.........190.........200.........210.........220 .........230..
 
   195....200.........210...... ...220.........230.........240....... ..250.........260..
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Query Sequence  RHQQAGVRILLNNAIEHVVDGE. . . . . . . . KVELTLQSGETLQADVVIYGIGISANEQLAR. . . . EANLDTANGIVIDEA
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Template Sequence  FLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQ
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TTTTTTTTTTS
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TTS
T

B
TTS
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TT
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   233......240.........250.........260.........270.........280.........290.........300.........310..
 
   263......270.........280.........290.........300.........310.........320.........330.......
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Query Sequence  CRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGD. . . . .
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Template Sequence  FNSKFPHIKVVGDVTFGP. . . . . . . . . MLAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAG
Template Known Secondary structure  SB
SSTT
GGGSSS
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   313......320.........330 .........340.........350.........360.........370.........380...
 
   338.340.........350.........360....... ..370.........380..... ....390.........
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Query Sequence  . . . . . . . . . . . . . . DWLCRGNPETQKAIWFNLQNGVLIGAVTLN. . QGREIRPIRKWIQSGKTF. DAKLLIDENIALKS
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Template Sequence  IDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSE
Template Known Secondary structure 

GGG
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   384.....390.........400.........410.........420.........430.........440.........450.........460..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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