Phyre 2 alignment of P77650 with c1ltxR

Job Description P77650
Confidence 99.50% Date Thu Jan 5 12:31:22 GMT 2012

Rank 153 Aligned Residues 244

% Identity 13% Template c1ltxR_

PDB info PDB header:transferase/protein binding Chain: R: PDB Molecule:rab escort protein 1; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid

Resolution 2.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	E	K	T	I	I	I	V	G	G	G	Q	A	A	A	M	A	A	A	S	L	R	Q	Q	G	F	T	G	E	L	H	L	F	S	D	E	R	H	L	P	Y	E	R	P	P	L	S	K	S	M	L	L	E	D	S	P	Q	L	Q	Q	V	L	P	A	N	W	W	Q	E	N	N	V	H	L	H	S	G	V	T	I
Query Conservation
Alig confidence																											.	.
Template Conservation																											.	.
Template Sequence	S	D	F	D	V	I	V	I	G	T	G	L	P	E	S	I	I	A	A	A	C	S	R	S	G	Q	.	.	R	V	L	H	V	D	S	R	S	Y	Y	G	G	N	W	A	S	F	S	F	S	G	L	L	S	W	L	K	E	Y	Q	E	N	T	E	N	S	M	W	Q	E	Q	I	L	E	N	E	E	A	I	P	L
Template Known Secondary structure	S	B		S							S													T	T		.	.							S	S	S	S	S		G	G	G														T	T	T								G	G	G	G	S		T	T						B
Template Predicted Secondary structure																											.	.
Template SS confidence
	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	T	L	G	R	D	T	R	E	L	V	L	T	N	G	E	S	W	H	W	D	Q	L	F	I	A	T	G	A	A	A	R	P	L	P	L	L	D	A	L	G	E	R	C	F	T	L	R	H	A	G	D	A	A	R	L	R	E	V	L	Q	P	E	R	S	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	S	K	D	K	T	I	Q	H	V	E	V	F	C	Y	A	S	Q	D	K	N	R	I	T	Y	S	Q	I	I	K	E	G	R	R	F	N	I	D	L	V	S	K	L	L	Y	S	R	G	L	L	I	D	L	L	I	K	S	N	V	S	R	Y	A	E	F	K	N	I	T	R	I	L	A	F	R	E	G	T	V	E
Template Known Secondary structure		S	S													S	T	T													T	G	G	G					S	S						T	T	S										T	G	G	G	G														T	T
Template Predicted Secondary structure
Template SS confidence
	89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.

																																																																						149	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	G	A	G	T	I	G	L	E	L
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Q	V	P	C	S	R	A	D	V	F	N	S	K	Q	L	T	M	V	E	K	R	M	L	M	K	F	L	T	F	C	V	E	Y	E	E	H	P	D	E	Y	R	A	Y	E	G	T	T	F	S	E	Y	L	K	T	Q	K	L	T	P	N	L	Q	Y	F	V	L	H	S	I	A	M	T	S	T	S	C	T	V	D	G
Template Known Secondary structure					S								S	S	S																T	T	G	G	G		G	G	G	T	G	G	G	T	T	S	B								S	S											T	T	T	S						B
Template Predicted Secondary structure
Template SS confidence
	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.
Query SS confidence																																																						.	.	.	.
Query Sequence	A	A	S	A	T	Q	R	R	C	K	V	T	V	I	E	L	A	A	T	V	M	G	R	N	A	P	P	P	V	Q	R	Y	L	L	Q	R	H	Q	Q	A	G	V	R	I	L	L	N	N	A	I	E	H	V	.	.	.	.	V	D	G	E	K	V	E	L	T	L	Q	S	G	E	T	L	Q	A	D	V	V	I	Y
Query Conservation																																																						.	.	.	.
Alig confidence																																																						.	.	.	.
Template Conservation
Template Sequence	L	K	A	T	K	K	F	L	Q	C	L	G	R	Y	G	N	T	P	F	L	F	P	L	Y	G	Q	G	E	L	P	Q	C	F	C	R	M	C	A	V	F	G	G	I	Y	C	L	R	H	S	V	Q	C	L	V	V	D	K	E	S	R	K	C	K	A	V	I	D	Q	F	G	Q	R	I	I	S	K	H	F	I	I
Template Known Secondary structure									T	T	T	T	S	S	S	S	S	S					T	T		T	T													T	T					T	T										T	T	T									T	T							S
Template Predicted Secondary structure
Template SS confidence
	352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

	236	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	I	G	I	S	A	N	E	Q	L	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	E	D	S	Y	L	S	E	N	T	C	S	R
Template Known Secondary structure		G	G	G	B		T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
	432	.	.	.	.	.	.	.	440	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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