Return to main results Retrieve Phyre Job Id

Job DescriptionP77650
Confidence100.00%DateThu Jan 5 12:31:22 GMT 2012
Rank35Aligned Residues379
% Identity22%Templatec1ebdB_
PDB info PDB header:complex (oxidoreductase/transferase)Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40...... .
Predicted Secondary structure 





















...................................
Query SS confidence 











































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . L
Query Conservation   
 






 


 

  
   
    




           ...................................
Alig confidence 
























..
















...................................
Template Conservation   








 


 

  
   
 .. 
 


     
                                         
Template Sequence  ETETLVVGAGPGGYVAAIRAAQLGQ. . KVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFA
Template Known Secondary structure 
S

STT
..
SS
TTST
GGGT



S



Template Predicted Secondary structure 








..





























Template SS confidence 















































































   910.........20.........30... ......40.........50.........60.........70.........80......
 
   48.50.........60.........70.........80.........90.........100.........110.........120.......
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  SKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFT
Query Conservation                           
       
                                              
Alig confidence 











































































....
Template Conservation                                                                              ....
Template Sequence  KVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNR. . . .
Template Known Secondary structure  TT
STTTT
S





TT


SSS....
Template Predicted Secondary structure 






































....
Template SS confidence 















































































   87..90.........100.........110.........120.........130.........140.........150.........160..
 
   128.130.........140.........150.........160.........170.........180.........190.........200.......
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  LRHAGDAARLREVLQPERSVVIIGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNN
Query Conservation                           
                                              

 
    
Alig confidence  ...
















































.


























Template Conservation  ...                    
                            .               
   

 
    
Template Sequence  . . . ILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI. LSGFEKQMAAIIKKRLKKKGVEVVTNA
Template Known Secondary structure  ...
T
SS

S

ST

SSSSS.STTS
TT

S
Template Predicted Secondary structure  ...
























.











Template SS confidence 















































































   163......170.........180.........190.........200.........210. ........220.........230........
 
   208.210....... ..220.........230.........240....... ..250.........260.........270.........
Predicted Secondary structure 


....













....





















Query SS confidence 









. . . .





























. . . .































Query Sequence  AIEHVVDGEK. . . . VELTLQSGETLQADVVIYGIGISANEQLAR. . . . EANLDTANGIVIDEACRTCDPAIFAGGDVAIT
Query Conservation   
  
     ....       
  
  
 

 
 
  
      ....   
   
 
 

    
    


 

 
  
Alig confidence 









....





























....































Template Conservation   
  
        
             
 

 
 
  
                 
 
 

    

 
 


 

 
  
Template Sequence  LAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPG
Template Known Secondary structure 
SSSTTS
S
S
TTSST

B
TTS
B


TT
B
SSTT
GGGSSS
Template Predicted Secondary structure 











































Template SS confidence 















































































   239240.........250.........260.........270.........280.........290.........300.........310........
 
   280.........290.........300.........310.........320.........330....... ..340
Predicted Secondary structure 





























...................
Query SS confidence 

























































. . . . . . . . . . . . . . . . . . .


Query Sequence  RLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGD. . . . . . . . . . . . . . . . . . . DWL
Query Conservation                 
   
  

 

 
                      

     ...................   
Alig confidence 
.........















































...................


Template Conservation   .........     
  

  

  
 
                    
  
 
   
   
                 
Template Sequence  P. . . . . . . . . ALAHKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRAL
Template Known Secondary structure 
.........

T






S



SSS


TT

TTT
Template Predicted Secondary structure 
.........






























Template SS confidence 















































































   319 320.........330.........340.........350.........360.........370.........380.........
 
   341........350.........360....... ..370.........380..... ....390.........400
Predicted Secondary structure 






..





.










Query SS confidence 


























. .

















.














Query Sequence  CRGNPETQKAIWFNLQNGVLIGAVTLN. . QGREIRPIRKWIQSGKTF. DAKLLIDENIALKSL
Query Conservation                     
 
    
..           
      .    
          
Alig confidence 


























..

















.














Template Conservation           

        


    
  
         

        
       
     
Template Sequence  ALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEI
Template Known Secondary structure  T



TTTTSTTT
BTS


TT
STT
Template Predicted Secondary structure 






















Template SS confidence 






























































   390.........400.........410.........420.........430.........440.........450..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions