Job Description P77650 Confidence 100.00% Date Thu Jan 5 12:31:22 GMT 2012 Rank 30 Aligned Residues 381 % Identity 17% Template c1dxlC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum Resolution 3.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	E	K	T	I	I	I	V	G	G	G	Q	A	A	A	M	A	A	A	S	L	R	Q	Q	G	F	T	G	E	L	H	L	F	S	D	E	R	H	L	P	Y	E	R	P	P	L	S	K	S	M	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.
Template Sequence		D	E	N	D	V	V	I	I	G	G	G	P	G	G	Y	V	A	A	I	K	A	A	Q	L	G	F	.	.	K	T	T	C	I	E	K	R	G	A	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	H	S	S	H	M	Y	H	E	A	K	H	S	F	A	N	H	G	V	K	V	S	N	V	E	I
Template Known Secondary structure			B		S							S														T		.	.								S	S	S	S	S							S																				T									S
Template Predicted Secondary structure																												.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
											54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																										.
Query SS confidence		.	.	.	.	.	.	.	.	.																																										.
Query Sequence		.	.	.	.	.	.	.	.	.	E	D	S	P	Q	L	Q	Q	V	L	P	A	N	W	W	Q	E	N	N	V	H	L	H	S	G	V	T	I	K	T	L	G	R	D	T	R	E	L	V	L	T	.	N	G	E	S	W	H	W	D	Q	L	F	I	A	T	G	A	A	A	R	P	L	P	L	L	D	A	L	G	E
Query Conservation		.	.	.	.	.	.	.	.	.																																										.
Alig confidence		.	.	.	.	.	.	.	.	.																																										.
Template Conservation
Template Sequence		D	L	A	A	M	M	G	Q	K	D	K	A	V	S	N	L	T	R	G	I	E	G	L	F	K	K	N	K	V	T	Y	V	K	G	Y	G	K	F	V	S	P	S	E	I	S	V	D	T	I	E	G	E	N	T	V	V	K	G	K	H	I	I	I	A	T	G	S	D	V	K	S	L	P	G	V	T	I	D	E	K
Template Known Secondary structure																													T						S					S	S	S	S						B	T	T	T	B							S														S	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	C	F	T	L	R	H	A	G	D	A	A	R	L	R	E	V	L	Q	P	E	R	S	V	V	I	I	G	A	G	T	I	G	L	E	L	A	A	S	A	T	Q	R	R	C	K	V	T	V	I	E	L	A	A	T	V	M	G	R	N	A	P	P	P	V	Q	R	Y	L	L	Q	R	H	Q	Q	A	G	V	R	I
Query Conservation
Alig confidence					.	.	.	.	.	.																																																		.
Template Conservation					.	.	.	.	.	.																																																		.
Template Sequence		K	I	V	.	.	.	.	.	.	S	S	T	G	A	L	A	L	S	E	I	P	K	K	L	V	V	I	G	A	G	Y	I	G	L	E	M	G	S	V	W	G	R	I	G	S	E	V	T	V	V	E	F	A	S	E	I	V	P	.	T	M	D	A	E	I	R	K	Q	F	Q	R	S	L	E	K	Q	G	M	K	F
Template Known Secondary structure		S			.	.	.	.	.	.							T		S	S			S					S	S		S														T								S	S	S	S	S	S	S	.	S	S														T	T	S
Template Predicted Secondary structure					.	.	.	.	.	.																																																		.
Template SS confidence
		163	.	.							.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.							.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure															.	.	.	.	.	.																																				.	.	.	.
Query SS confidence															.	.	.	.	.	.																																				.	.	.	.
Query Sequence		L	L	N	N	A	I	E	H	V	V	D	G	E	.	.	.	.	.	.	K	V	E	L	T	L	Q	S	G	E	T	L	Q	A	D	V	V	I	Y	G	I	G	I	S	A	N	E	Q	L	A	R	E	A	N	L	.	.	.	.	D	T	A	N	G	I	V	I	D	E	A	C	R	T	C	D	P	A	I	F	A	G
Query Conservation															.	.	.	.	.	.																																				.	.	.	.
Alig confidence															.	.	.	.	.	.																																				.	.	.	.
Template Conservation
Template Sequence		K	L	K	T	K	V	V	G	V	D	T	S	G	D	G	V	K	L	T	V	E	P	S	A	G	G	E	Q	T	I	I	E	A	D	V	V	L	V	S	A	G	R	T	P	F	T	S	G	L	N	L	D	K	I	G	V	E	T	D	K	L	G	R	I	L	V	N	E	R	F	S	T	N	V	S	G	V	Y	A	I
Template Known Secondary structure			T	T							B		S	S	S	S		B			B			S	S	S	S			B					S													T	T				T	T	T						T	T	S						T	T	S	B		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	V	A	I	T	R	L	D	N	G	A	L	H	R	C	E	S	W	E	N	A	N	N	Q	A	Q	I	A	A	A	A	M	L	G	L	P	L	P	L	L	P	P	P	W	F	W	S	D	Q	Y	S	D	N	L	Q	F	I	G	D	M	R	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.
Template Sequence		G	D	V	I	P	G	P	.	.	.	.	.	.	.	.	.	M	L	A	H	K	A	E	E	D	G	V	A	C	V	E	Y	L	A	G	K	V	G	H	V	D	Y	D	K	V	P	G	V	V	Y	T	N	P	E	V	A	S	V	G	K	T	E	E	Q	V	K	E	T	G	V	E	Y	R	V	G	K	F	P	F	M
Template Known Secondary structure		S	T	T	S	S	S		.	.	.	.	.	.	.	.	.																			T	S						T	T	S							S	S	S															T	T										G	G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.										.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
					338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure		.	.	.																															.	.																			.
Query SS confidence		.	.	.																															.	.																			.
Query Sequence		.	.	.	D	W	L	C	R	G	N	P	E	T	Q	K	A	I	W	F	N	L	Q	N	G	V	L	I	G	A	V	T	L	N	.	.	Q	G	R	E	I	R	P	I	R	K	W	I	Q	S	G	K	T	F	.	D	A	K	L	L	I	D	E	N	I	A	L	K	S	L
Query Conservation		.	.	.																															.	.																			.
Alig confidence		.	.	.																															.	.																			.
Template Conservation
Template Sequence		A	N	S	R	A	K	A	I	D	N	A	E	G	L	V	K	I	I	A	E	K	E	T	D	K	I	L	G	V	H	I	M	A	P	N	A	G	E	L	I	H	E	A	A	I	A	L	Q	Y	D	A	S	S	E	D	I	A	R	V	C	H	A	H	P	T	M	S	E	A
Template Known Secondary structure		G								T												T	T	T		B									T	T														T	T		B							S				S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.