Return to main results Retrieve Phyre Job Id

Job DescriptionP52598
Confidence99.12%DateThu Jan 5 12:05:48 GMT 2012
Rank14Aligned Residues60
% Identity28%Templated1j5ya1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Biotin repressor-like
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.... .....20.........30.........40........ .50.........60
Predicted Secondary structure 

.








.



Query SS confidence 













.

































.











Query Sequence  MIPVERRQIILEMV. AEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGA. VVLVSGGVQSPG
Query Conservation 
   

   

  
.     
 
 


  
 

  





  

  
 .
 
  


    
Alig confidence 













.

































.











Template Conservation    
 

   

  
      

  


  
 

 


 


  
   
  
     

 
  
Template Sequence  TVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAG
Template Known Secondary structure 
SS
B
TS
T


TT


Template Predicted Secondary structure 

















Template SS confidence 





























































   5....10.........20.........30.........40.........50.........60......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions