Job Description P52598 Confidence 95.27% Date Thu Jan 5 12:05:48 GMT 2012 Rank 219 Aligned Residues 140 % Identity 17% Template c3kv1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri Resolution 1.70 Å

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		77	.	.	80	.	.	.	.	.	.	.	.	.					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		T	Q	K	A	A	I	G	K	L	A	A	S	L	.	.	.	.	V	Q	P	G	S	C	I	Y	L	D	A	G	T	T	T	L	A	I	A	Q	H	L	I	H	M	E	S	L	T	V	V	T	N	D	F	V	I	A	D	Y	L	L	D	N	S	N	C	T	I	I	H	T	G	G	A	V	C	R	E	N	R	S	C
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		E	Q	R	K	Q	V	A	A	L	V	S	S	Y	L	N	N	N	L	Q	E	G	X	A	V	A	V	G	Q	G	Q	N	V	A	A	V	A	D	H	A	G	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	R	N	A	R	F	V	S	A	I	G	G	T	H	I	I	N	.	.	.
Template Known Secondary structure																					T	T								S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S	B		B						.	.	.
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.																		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		V	G	E	A	A	A	T	M	L	R	S	L	M	I	D	Q	A	F	I	S	A	S	S	W	S	V	R	.	G	I	S	T	P	A	E	D	K	V	T	V	K	R	A	I	A	S	A	S	R	Q	R	V	L	V	C	D	A	T	K	Y	G	Q	V	A	T	W	L	A	L	P	L	S	E	F	D	Q	I	I	T	D
Query Conservation																													.
Alig confidence																													.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	H	I	C	R	R	L	A	K	K	Y	G	G	S	S	E	T	L	Y	A	P	A	Y	V	N	D	P	S	L	R	S	A	F	X	E	H	A	T	I	K	E	T	L	S	Q	A	R	K	A	E	F	A	.	.	.	.	.	.	.	.	.	.	.	L	V	G	I	G	D	X	D	E	N	S	H	X	V	K	L
Template Known Secondary structure														T								S	B	S	B		S	S									T	S												T		S			.	.	.	.	.	.	.	.	.	.	.											T					T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.												150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		232	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		D	G	L	P	E	S	A	S	.	R	A	L	V	K	Q	D	L
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		G	F	F	T	P	K	E	F	V	E	A	R	L	N	D	G	I
Template Known Secondary structure		T	S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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