Return to main results Retrieve Phyre Job Id

Job DescriptionP52598
Confidence97.36%DateThu Jan 5 12:05:48 GMT 2012
Rank78Aligned Residues93
% Identity19%Templatec2dt5A_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:at-rich dna-binding protein; PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8
Resolution2.16 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10........ .20.........30.........40.........50.........60.........70.........80....
Predicted Secondary structure 

..

















Query SS confidence 











. .

































































Query Sequence  RQIILEMVAEKG. . IVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGK
Query Conservation     

  
    .. 
 
 


  
 

  





  

  
 
 
  


              
       
  

 
Alig confidence 











..




























..





...................









Template Conservation 
   
  
       


  

   

    




   
  
..  
 

................... 
  
   
 
Template Sequence  YLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYFGSYG. . TRGVGY. . . . . . . . . . . . . . . . . . . TVPVLKRELR
Template Known Secondary structure  TT


TS
TT


..
TTT
...................
Template Predicted Secondary structure 









..




...................
Template SS confidence 















































































   14.....20.........30.........40.........50...... ...60.. .......70..
 
   85....90.........100.........110.........120
Predicted Secondary structure 










Query SS confidence 



































Query Sequence  LAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVV
Query Conservation   
   
     



 


   
   
     



Alig confidence 



































Template Conservation    

      
 




 

 

        
  

Template Sequence  HILGLNRKWGLCIVGMGRLGSALADYPGFGESFELR
Template Known Secondary structure  TTTS


S
S


SS
Template Predicted Secondary structure 











Template SS confidence 



































   73......80.........90.........100........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions