 |
Job Description | P0AA89 | Confidence | 57.13% | Date | Thu Jan 5 11:12:12 GMT 2012 |
Rank | 44 | Aligned Residues | 61 |
% Identity | 11% | Template | d1jx4a2 |
SCOP info | DNA/RNA polymerases
| DNA/RNA polymerases
| Lesion bypass DNA polymerase (Y-family), catalytic domain
|
Resolution | 1.70 |
|
 |
  |   |
351 | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | |
|
. | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | I | L | R | K | V | S | Q | A | F | Y | D | N | V | R | S | S | D | Y | V | F | R | Y | G | G | D | E | F | I | I | V | L | T | E | A | S | E | . |
. |
N | E | T | L | R | T | A | E | R | I | R | S | R | V | E | K | T | K | L | K | A | A | N | G | E | D | I | A | L | S | L | S | I | G | A | A |
Query Conservation |   |
  |
|
|   |   |
|
|   |   |
|   |   |   |   |
|   |   |
|   |
|
|
|   |
|
|
|
|
|   |
|
|
|   |   |   |   |   | . | . |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   | . | . | . |
|
|   |   |
|   |
|
|   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|   |   |   | . | . | . | . | . | . | . | . | . |   |
|   |   |   |
|   |
|
|
|
Template Sequence |   |
Q | V | S | S | R | I | X | N | L | L | R | E | Y | S | E | K | . |
. |
. |
I | E | I | A | S | I | D | E | A | Y | L | D | I | S | D | K | V | R | D | Y | R | E | A | Y | N | L | G | L | E | I | K | N | K | I | L | E | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
E | K | I | T | V | T | V | G | I | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T | T |
| S |
| . | . | . |  |  |  |  |  | T | T |  |  |  |  |  |
| T | T | T |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |
|
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | |
|
|
. | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | 140 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|