|   |
18 | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | |
|
|
. | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
Query Sequence |   |
P | L | Y | L | H | A | Y | A | F | H | L | N | M | R | L | E | R | V | L | P | A | D | L | L | D | I | A | S | E | N | N | L | R | G | V | K | I | H | V | L | D | G | E | R | F | S | L | G | N | M | D | D | K | E | L | . |
. |
. |
S | A | F | G | D | K | A | R | R | L | N | L | D | I | H | I | . |
. |
. |
. |
. |
. |
Query Conservation |   |
|
|   |
|   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |
|   |
|   |
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
| . | . | . |   |   |
|
|   |   |
|   |   |   |
|
|   |
|   |   | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
Template Conservation |   |
  |
|
|   |
|   |   |   |   | . | . |
|   |   |   |   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |
|
|
|   |
|
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |
|   |
|   |
|
|   |
|   |   |   |
Template Sequence |   |
T | L | G | L | G | T | M | T | F | . |
. |
G | E | Q | N | S | E | A | D | A | H | A | Q | L | D | Y | A | V | A | Q | G | I | N | L | I | D | V | A | E | M | Y | P | V | P | P | R | P | E | T | Q | G | L | T | E | T | Y | V | G | N | W | L | A | K | H | G | S | R | E | K | L | I | I | A | S | K | V | S | G | P | S |
Template Known Secondary structure |   |
S |  |  |  |  |
| T | T | B | . | . | T | T | T | B |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |
|
| T | T |
| S | S | S |
|
| T | T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| G | G | G |
|  |  |  |  |  |  |
|
| S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
| . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
15 | . | . | . | . | 20 | . | . | . | |
|
. | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
89 | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | |
. | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
E | T | S | A | S | D | K | A | S | I | D | E | A | V | A | I | A | L | K | . |
T | G | A | S | S | V | R | F | Y | P | R | Y | E | G | N | L | R | D | V | L | S | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | A | N | D | I | A | Y | V | R | E | T | Y | Q | D | S | G |
Query Conservation |   |
. | . | . | . | . | . | . | . |   |   |   |   |   |
|   |
|   |
|   |   |   |
|
|   |
|   |   | . |
|
|
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |
|   |   |
|   |   |   |
|   |   |   |
|
Alig confidence |   |
. | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|
|   |   |
|
|   |
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|   |
Template Sequence |   |
R | N | N | D | K | G | I | R | P | D | Q | A | L | D | R | K | N | I | R | E | A | L | H | D | S | L | K | R | L | Q | T | D | Y | L | D | L | Y | Q | V | H | W | P | Q | R | P | T | N | C | F | G | K | L | G | Y | S | W | T | D | S | A | P | A | V | S | L | L | D | T | L | D | A | L | A | E | Y | Q | R | A | G | K |
Template Known Secondary structure |   |
| T | T |
|
|
| S | S | T | T |
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S | S |
|  |  |  |  |  |  |
| S |
| S | S |
|
| S |
| T | T |
|
| S |
|
|
|
| S | S |
|
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . |
  |
  |   |
146 | . | |
. | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  | . |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | T | . |
F | T | I | E | Q | H | E | D | L | K | S | H | E | L | V | S | L | V | K | E | S | E | M | E | S | L | S | L | L |
Query Conservation |   |
|   | . |
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |
|
|
|   |
|   |   |   |   |
|
|   |   |
Alig confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | R | Y | I | G | V | S | N | E | T | A | F | G | V | M | R | Y | L | H | L | A | D | K | H | D | L | P | R | I | V | T | I |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|
|
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
173 | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . |
  |