Job Description P32134 Confidence 100.00% Date Thu Jan 5 11:49:19 GMT 2012 Rank 12 Aligned Residues 268 % Identity 17% Template c2qw5B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution Resolution 1.78 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																	.	.	.	.																																																										.	.	.	.
Query SS confidence																	.	.	.	.																																																										.	.	.	.
Query Sequence		L	Y	L	H	A	Y	A	F	H	L	N	M	R	L	E	.	.	.	.	R	V	L	P	A	D	L	L	D	I	A	S	E	N	N	L	R	G	V	K	I	H	V	L	D	G	E	R	F	S	L	G	N	M	D	D	K	E	L	S	A	F	G	D	K	A	R	R	L	N	L	D	I	H	I	E	T	.	.	.	.
Query Conservation																	.	.	.	.																																																										.	.	.	.
Alig confidence																	.	.	.	.																							.																																			.	.	.	.
Template Conservation																																											.
Template Sequence		I	Y	I	S	F	F	X	F	T	T	N	L	Q	P	D	N	L	D	Y	R	R	I	V	V	A	H	I	K	K	L	Q	R	F	G	Y	S	G	F	E	F	P	.	I	A	P	G	L	P	E	N	Y	A	Q	D	L	E	N	Y	T	N	L	R	H	Y	L	D	S	E	G	L	E	N	V	K	I	S	T	N	V	G
Template Known Secondary structure						G	G	G	T		S				T	T																		T	T								.						G	G	G																		T	T	T	T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
																91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																				.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	S	D	K	A	S	I	D	E	A	V	A	I	A	L	K	T	G	A	S	S	V	R	F	Y	P	R	Y	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	R	D	V	L	S	I	I	A	N	D	I	A	Y	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	R	T	F	D	P	S	S	N	Y	P	E	Q	R	Q	E	A	L	E	Y	L	K	S	R	V	D	I	T	A	A	L	G	G	E	I	X	X	G	P	I	V	I	P	Y	G	V	F	P	T	T	D	F	N	E	P	I	W	S	D	E	L	Q	E	H	L	K	V	R	Y	A	N	A	Q	P	I	L	D	K	L
Template Known Secondary structure				S	S	S		T	T		S	S																					T	T		S							S	S		T	T				B		T	T			B
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.																																										.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.																																										.	.	.	.	.
Query Sequence		R	E	T	Y	Q	D	S	G	L	T	F	T	I	E	Q	H	E	D	L	.	.	.	.	.	.	K	S	H	E	L	V	S	L	V	K	E	S	E	M	E	S	L	S	L	L	F	D	F	A	N	M	I	N	A	N	E	H	P	I	D	A	L	K	T	M	A	.	.	.	.	.	P	H	I	T	Q	V	H	I	K
Query Conservation																					.	.	.	.	.	.																																										.	.	.	.	.
Alig confidence																					.	.	.	.	.	.																																										.	.	.	.	.
Template Conservation
Template Sequence		G	E	Y	A	E	I	K	K	V	K	L	A	I	E	P	I	T	H	W	E	T	P	G	P	N	K	L	S	Q	L	I	E	F	L	K	G	V	K	S	K	Q	V	G	V	V	I	D	S	A	H	E	I	L	D	G	E	G	P	E	I	F	K	T	Q	V	E	Y	L	A	Q	Q	G	R	L	H	Y	V	Q	V	S
Template Known Secondary structure								T	T										T	T	T		S	S			S										T				T	T																														T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		D	A	L	I	V	K	E	P	G	G	L	G	H	K	A	C	I	S	G	Q	G	D	M	P	F	K	A	L	L	T	H	L	I	C	L	G	D	D	E	P	Q	V	T	A	Y	G	L	E	E	E	V	D	Y	Y	A	P	A	F	R	F	E	D	E	D	D	N	P	W	.	.	I	P	Y	R	Q	M	S	E	T	P
Query Conservation																																																																						.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.																							.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.																							.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	.	.	.	.	.	.	.	.	.	.	.	D	R	G	A	L	H	T	S	W	L	P	W	K	S	F	L	T	P	I	V	K	V	.	Y	D	G	P	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	I	F	N	A	I	P	A	F	T	N	S	L	R	L	T	R	R	K	F
Template Known Secondary structure			T	.	.	.	.	.	.	.	.	.	.	.	T	S	S		S	S	S	S															.			S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S						T	T	T	T			S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.																							.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		249	250												.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.																		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	E	N	H	L	L	D	A	R	L	R	K	E	K	E	D	A	I	N	Q	I	N	H	V	R	N	V	L	Q	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	I	P	D	E	D	P	P	N	Q	Y	P	N	A	Y	D	I	A	D	E	A	I	K	V	T	R	K	E	L	K	K	I
Template Known Secondary structure		B		T	T	T	S				S	S		B
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions