Job Description P32134 Confidence 92.79% Date Thu Jan 5 11:49:19 GMT 2012 Rank 109 Aligned Residues 164 % Identity 13% Template c1ydoC_ PDB info PDB header:lyase Chain: C: PDB Molecule:hmg-coa lyase; PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181. Resolution 2.71 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.							70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.										.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Query Sequence		L	D	I	A	S	E	N	N	L	R	G	V	K	I	H	V	L	D	G	E	R	F	S	L	G	N	M	D	D	.	.	.	.	.	.	K	E	L	S	A	F	G	D	K	A	R	R	L	N	L	D	I	H	I	.	.	.	.	.	.	.	.	.	E	T	S	A	S	D	K	A	S	I	D	E	A	V	A	I	A
Query Conservation																															.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	N	A	L	E	G	G	I	N	E	A	C	V	F	X	S	A	S	E	T	H	N	R	K	N	I	N	K	S	T	S	E	S	L	H	I	L	K	Q	V	N	N	D	A	Q	K	A	N	L	T	T	R	A	Y	L	S	T	V	F	G	C	P	Y	E	K	D	V	P	I	E	Q	V	I	R	L	S	E	A	L
Template Known Secondary structure									T		S								S	S						T	T	T		S																			T	T										T	T		B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		L	K	T	G	A	S	S	V	R	F	Y	P	R	Y	E	G	N	L	R	D	V	L	S	I	I	A	N	D	I	A	Y	V	R	E	T	Y	Q	D	S	G	L	T	F	T	I	E	Q	H	E	D	L	.	.	.	K	S	H	E	L	V	S	L	V	K	E	S	E	M	E	S	L	S	L	L	F	D	F	A	N	M
Query Conservation																																																					.	.	.
Alig confidence																																				.	.	.	.	.													.	.	.														.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.																													.	.	.	.	.	.
Template Sequence		F	E	F	G	I	S	E	L	S	L	G	D	T	I	G	A	A	N	P	A	Q	V	E	T	V	L	E	A	L	L	A	R	F	P	.	.	.	.	.	A	N	Q	I	A	L	H	F	H	D	T	R	G	T	A	L	A	N	X	V	T	A	L	Q	X	G	I	T	.	.	.	.	.	.	V	F	D	G	S	A	G
Template Known Secondary structure					T		S							S	S																	T	T	S		.	.	.	.	.	G	G	G						B	G	G	G	S													T			.	.	.	.	.	.					B	G	G
Template Predicted Secondary structure																																				.	.	.	.	.																													.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.							.	230	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	A	N	E	H	P	I	D	A	L	K	T	M	A	P	H	I	T	Q	V	H	I	K	D	A	L	I	V	K	E	P	G	G	L	G	H	K	A	C	I	S	G	Q	G	D	M	P	F	K	A	L	L	T	H	L	I	C	L	G	D	D	E	P	Q
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	G	G	C	P	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	S	S	G	N	A	A	T	E	D	I	V	Y	X	L	E	Q	X	D	I	K	T	N	V
Template Known Secondary structure		G					T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						B		B											T	T		B
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.																																	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions