Job Description P0A9S7 Confidence 100.00% Date Thu Jan 5 11:11:16 GMT 2012 Rank 20 Aligned Residues 223 % Identity 23% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		6	.	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		L	S	V	N	G	L	M	M	R	F	.	.	.	G	G	L	L	A	V	N	N	V	N	L	E	L	Y	P	Q	E	I	V	S	L	I	G	P	N	G	A	G	K	T	T	V	F	N	C	L	T	G	F	Y	K	P	T	G	G	T	I	L	L	R	D	Q	H	L	E	G	L	P	G	Q	Q	I	A	R	M	G	V
Query Conservation												.	.	.
Alig confidence												.	.	.																																																																		.
Template Conservation																																																																																.
Template Sequence		V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V	Q	W	L	R	A	Q	.	L
Template Known Secondary structure												S		G	G	G			S			S							S	S	S							S	S	S	T	T									T	T	S	S			S						S	S	S	S		B	T	S	S						T	T	S	.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		1031	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.		.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	T	F	Q	H	V	R	L	F	R	E	M	T	V	I	E	N	L	L	V	A	Q	H	Q	Q	L	K	T	G	L	F	S	G	L	L	K	T	P	S	F	R	R	A	Q	S	E	A	L	D	R	A	A	T	W	L	E	R	I	G	L	L	E	H	A	N	R	Q	A	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	V	S	Q	E	P	I	L	F	D	C	.	S	I	A	E	N	I	A	Y	G	D	N	S	R	V	V	S	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G
Template Known Secondary structure						S	S					S	S	.	B						T				S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T						S	S	T	T	T	G	G	G		B		S	T	T	S
Template Predicted Secondary structure														.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1110	.	.	.	.	.	.	.	.	.	1120	.		.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.																				1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	L	A	Y	G	D	Q	R	R	L	E	I	A	R	C	M	V	T	Q	P	E	I	L	M	L	D	E	P	A	A	G	L	N	P	K	E	T	K	E	L	D	E	L	I	A	E	L	R	N	H	H	N	T	T	I	L	L	I	E	H	D	M	K	L	V	M	G	I	S	D	R	I	Y	V	V	N	Q	G	T
Query Conservation
Alig confidence																																																				.	.																	.
Template Conservation																																																				.	.																	.
Template Sequence		T	Q	L	S	G	G	Q	K	Q	R	I	A	I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	E	.	.	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	N	.	A	D	L	I	V	V	I	Q	N	G	K
Template Known Secondary structure			S	S																			S	S					S		S	S	S																	S	S	.	.	S	S							S		T	T	G	G	G	S	.		S							T	B
Template Predicted Secondary structure																																																				.	.																	.
Template SS confidence
		1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.			1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.		.	.	.	.	1240	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	A	N	G	T	P	E	Q	I	R	N	N	P	D	V	I	R	A	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	E	H	G	T	H	Q	Q	L	L	A	Q	K	G	I	Y	F	S	M	V
Template Known Secondary structure														S		S
Template Predicted Secondary structure
Template SS confidence
		1247	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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