Job Description P0A9S7 Confidence 98.76% Date Thu Jan 5 11:11:16 GMT 2012 Rank 87 Aligned Residues 142 % Identity 18% Template c2o8bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair Resolution 2.75 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.						.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		S	Q	P	L	L	S	V	N	G	L	M	M	R	F	.	.	.	.	.	G	G	L	L	A	V	N	N	V	N	L	E	L	Y	P	Q	E	I	V	S	L	I	G	P	N	G	A	G	K	T	T	V	F	N	C	L	T	G	F	Y	K	P	T	G	G	T	I	L	L	R	D	Q	H	L	E	G	L	P	G	Q	Q
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Q	G	R	I	I	L	K	A	S	R	H	A	C	V	E	V	Q	D	E	I	A	F	I	P	N	D	V	Y	F	E	K	D	K	Q	M	F	H	I	I	T	G	P	N	M	G	G	K	S	T	Y	I	R	Q	T	G	V	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure		T		S										T	T	T	T	T	S	T	T												T	T	S	S								S	T	T	S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		628	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.																					.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	R	M	G	V	V	R	T	F	Q	H	V	R	L	F	R	E	M	T	V	I	E	N	L	L	V	A	Q	H	Q	Q	L	K	T	G	L	F	S	G	L	L	K	T	P	S	F	R	R	A	Q	S	E	A	L	D	R	A	A	T	W	L	E	R	I	G	L	L	E	H	A	N	R	Q	A	S	N	L	A	Y
Query Conservation
Alig confidence							.											.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.											.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	Q	I	G	.	C	F	V	P	C	E	S	A	E	V	.	.	.	S	I	V	D	C	I	L	A	R	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T
Template Known Secondary structure					T	T	.			B	S	S	S					.	.	.				S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.											.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		688	.	690	.	.		.	.	.	.	.	.	.	700	.	.				.	.	.	.	.	.	.	710	.	.	.																																																	.	.
		157	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure														.	.																				.
Query SS confidence														.	.																				.
Query Sequence		G	D	Q	R	R	L	E	I	A	R	C	M	.	.	V	T	Q	P	E	I	L	M	L	D	E	P	A	A	G	L	N	P	K	.	E	T	K	E	L	D	E	L	I	A	E	L	R	N	H	H	N	T	T	I	L	L	I	E	H	D	M	K
Query Conservation														.	.																				.
Alig confidence														.	.																				.
Template Conservation
Template Sequence		F	M	A	E	M	L	E	T	A	S	I	L	R	S	A	T	K	D	S	L	I	I	I	D	E	L	G	R	G	T	S	T	Y	D	G	F	G	L	A	W	A	I	S	E	Y	I	A	T	K	I	G	A	F	C	M	F	A	T	H	F	H	E
Template Known Secondary structure														T	T			T	T	S						S				S	S																			T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		725	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions