Job Description P32152 Confidence 100.00% Date Thu Jan 5 11:49:32 GMT 2012 Rank 1 Aligned Residues 355 % Identity 10% Template c3sqnB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:conserved domain protein; PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis Resolution 2.31 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		Q	K	H	D	N	D	D	R	L	L	A	L	L	L	L	N	T	F	T	P	R	A	Q	L	A	S	A	L	N	L	P	E	T	W	V	A	E	R	L	P	R	L	K	Q	R	Y	E	R	T	C	C	L	A	S	R	P	G	L	G	H	F	I	D	E	T	E	E	K	R	V	I	L	L	A	N	L	L	R	K	.
Query Conservation																																																																																	.
Alig confidence																															.	.	.																																																.
Template Conservation																															.	.	.
Template Sequence		P	Q	S	I	S	I	Q	L	L	K	E	L	L	F	T	K	E	L	V	T	T	S	F	L	S	T	S	G	Y	.	.	.	E	T	L	K	R	H	I	K	K	X	N	Q	A	L	R	D	F	H	L	T	I	Q	L	T	T	X	T	I	Q	L	I	G	A	E	S	N	I	R	I	F	Y	H	R	L	L	V	P	F
Template Known Secondary structure																	S														.	.	.																T	T	T							S	S						S														G	G	G
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
					153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.										.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure		.	.	.																																																									.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																									.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	D	P	F	L	I	P	L	A	G	I	T	R	D	N	L	Q	H	L	S	T	A	C	D	N	Q	H	R	W	P	L	M	Q	G	D	Y	L	S	S	L	I	L	A	I	Y	A	L	R	N	Q	L	T	D	E	W	P	Q	.	.	.	.	.	.	.	.	.	Y	P	G	D	E	I	K	Q	I	V	E	H
Query Conservation		.	.	.																																																									.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	H	N	N	Y	F	F	D	D	Y	S	I	H	E	E	H	Y	F	Q	F	L	K	Q	V	Y	S	S	E	L	T	V	E	T	E	E	I	F	G	A	C	W	F	F	I	N	T	I	R	N	K	A	N	C	R	V	S	Q	F	S	F	D	S	K	D	V	L	F	Q	L	Y	Q	P	S	L	A	K	L	Y	A	S
Template Known Secondary structure		G	G		T	T	T	S	T	T																	T	T	T	T				B																		T	T										T	T																	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.								.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.																															.
Query SS confidence																			.	.	.	.	.	.	.																															.
Query Sequence		S	G	L	F	L	G	D	N	A	V	R	T	L	T	G	L	I	.	.	.	.	.	.	.	E	K	Q	H	Q	Q	A	Q	V	I	S	A	D	N	V	Q	G	L	L	Q	R	V	P	G	I	A	S	L	N	I	.	I	D	A	Q	L	V	E	N	I	T	G	H	L	L	R	C	L	A	A	P	V	W	I	A	E
Query Conservation																			.	.	.	.	.	.	.																															.
Alig confidence																			.	.	.	.	.	.	.																															.
Template Conservation
Template Sequence		E	G	I	Y	L	Q	G	E	E	S	F	F	A	F	F	C	F	L	E	S	W	N	Y	D	N	V	Y	G	E	T	L	A	S	A	L	H	T	H	Y	S	Q	L	R	K	S	L	Q	Q	F	V	T	N	L	S	T	E	E	D	L	I	Q	T	N	L	L	D	N	L	L	L	L	F	I	K	Y	T	E	S	P	T
Template Known Secondary structure		T	T					T													T	B		S	S																																			G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.			.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.																				.	.																		.
Query SS confidence																						.																				.	.																		.
Query Sequence		H	R	Q	S	S	M	N	N	L	K	A	A	W	P	A	A	F	D	M	S	.	L	H	F	I	T	L	L	R	E	Q	L	D	I	P	L	F	D	S	D	.	.	L	I	G	L	Y	F	A	C	A	L	E	R	H	Q	N	E	R	.	Q	P	I	I	L	L	S	D	Q	N	A	I	A	T	I	N	Q	L	A	I
Query Conservation																						.																				.	.																		.
Alig confidence																						.																				.	.																		.
Template Conservation
Template Sequence		L	S	E	Q	F	Q	L	E	Y	Q	E	L	X	T	E	Q	L	S	K	S	N	Q	E	L	L	E	I	L	S	R	Y	T	T	I	E	E	P	T	Y	F	L	S	L	A	S	L	L	E	K	Q	A	I	Y	S	I	Q	A	Q	T	X	T	A	Y	F	L	F	Q	G	E	P	A	W	K	A	F	L	Q	Q	E	L
Template Known Secondary structure							G	G	G	G									T	T	T										T	T	S			S	S																		T	T				S									S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	D	V	L	N	C	R	V	I	I	A	R	S	L	S	E	L	V	A	I	R	E	E	I	E	P	L	L	I	I	N	N	S	H	Y	L	L	D	D	A	V	N	N	Y	I	T	V	K	N	I	I	T	A	A	G	I	E	Q	I	K	H	F	L	A	T	A	F
Query Conservation
Alig confidence																																.	.	.							.	.
Template Conservation																																.	.	.							.	.
Template Sequence		A	A	Y	L	G	T	R	V	K	L	Q	A	I	E	Y	V	E	L	S	Q	L	T	L	N	E	A	D	I	I	I	.	.	.	S	N	F	P	H	L	.	.	D	L	P	V	F	Y	L	S	L	I	P	T	K	N	E	L	R	R	L	A	E	L	T	L	H	S	Y
Template Known Secondary structure							T	T								G	G	G	G	T	T					T	T					.	.	.		S					.	.	S	S							S	S
Template Predicted Secondary structure																																.	.	.							.	.
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.				.	.	.	450	.	.			.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions